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Fredy Barneche


Contact details
Institut de Biologie de l’Ecole Normale Supérieure (IBENS)
46 rue d’Ulm, 75005 Paris, France
Phone : (33 (0) 144 32 35 28
Fax : (33) (0) 144 32 39 35
E-mail

Research interests
Plant photomorphogenesis
Environmental signals and chromatin

Short CV
• 2016 - CNRS Research Director. IBENS, Paris, France.
• 2008 - CNRS Research Scientist. IBENS, Paris, France.
• 2006 - Human Frontiers of Science Program (HFSP) post-doc fellow. Stazione Zoologica "A. Dohrn", Naples, Italy.
• 2002 - European Molecular Biology Organization (EMBO) post-doc fellow. University of Geneva, Switzerland.
• 2001 - PhD in Molecular and Cellular Plant Biology. Perpignan and Toulouse Universities, France.
• 1998 - Postgraduate Research Assistant. Prof. Craig S. Pikaard lab, Washington University, Saint-Louis, USA.
• 1997 – Master in Molecular and Cellular Plant Biology. Laboratory of Plants Genome and Development, Perpignan, France.
• 1995 - Undergraduate Research Assistant. Laboratory of Molecular Ecology, University of Pau, France.

Publications - from 2010

• Barneche F, Baroux C. (2017) Unreeling the chromatin thread : a genomic perspective on organization around the periphery of the Arabidopsis nucleus. Genome Biol . 18(1):97 doi : 10.1186/s13059-017-1239-6. Correspondance : barneche chez ens.fr

• Bourbousse C., Benhamed M. and F. Barneche* (2017). Profiling developmentally and environmentally controlled chromatin reprogramming. (Review) Methods in Molecular Biology, in press.

• Jégu T, Veluchamy A, Ramirez-Prado JS, Rizzi-Paillet C, Perez M, Lhomme A, Latrasse D, Coleno E, Vicaire S, Legras S, Jost B, Rougée M, Barneche F, Bergounioux C, Crespi M, Mahfouz M, Hirt H, Raynaud C and Benhamed M. (2017) The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility. Genome Biology 18(1):114. doi : 10.1186/s13059-017-1246-7.

• Snoek BL, Pavlova P, Tessadori F, Peeters AJM, Bourbousse C, Barneche F, de Jong JH, Fransz PF, van Zanten M. (2017) Genetic Dissection of Morphometric Traits Reveals that Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana. G3 . doi : 10.1534/g3.117.043539.

• Schalk C, Drevensek S, Kramdi A, Kassam M, Ahmed I, Cognat V, Graindorge S, Bergdoll M, Baumberger N, Heintz D, Bowler C, Genschik P, Barneche F, Colot V, Molinier J. (2016) DNA DAMAGE BINDING PROTEIN 2 (DDB2) Shapes the DNA Methylation Landscape. Plant Cell.

• Venturelli S, Belz RG, Kämper A, Berger A, von Horn K, Wegner A, Böcker A, Zabulon G, Langenecker T, Kohlbacher O, Barneche F, Weigel D, Lauer UM, Bitzer M, Becker C. (2015) Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors. Plant Cell.

• Bourbousse C, Mestiri I, Zabulon G, Bourge M, Formiggini F, Koini MA, Brown SC, Fransz P, Bowler C, Barneche F. (2015) Light signaling controls nuclear architecture reorganization during seedling establishment. PNAS. Correspondance : barneche chez ens.fr

• Barneche F., Malapeira J. and P. Mas. (2014) The impact of chromatin dynamics on plant light responses and circadian clock function. J. Exp. Bot.. (Review). Correspondance : barneche chez ens.fr

• Bourbousse C., Ahmed I., Roudier F., Zabulon G., Blondet E., Balzergue S., Colot V., Bowler C. and F. Barneche. (2012) Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis. PLoS Genetics. Correspondance : barneche chez ens.fr

• Castells E., Molinier J., Benvenuto G., Bourbousse C., Zabulon G., Zalc A., Cazzaniga S., Genschik P., Barneche F.*, and C. Bowler. (2011) The conserved factor DE-ETIOLATED 1 cooperates with CUL4-DDB1DDB2 to maintain genome integrity upon UV stress. EMBO J.. Correspondance : barneche chez ens.fr

• Roudier F., Ahmed I., Bérard C., Sarazin A., Mary-Huard T., Cortijo S., Caillieux E., Al-Shikley L., Duvernois-Berthet E., Giraut L., Després B., Drevensek S., Barneche F., Bowler C., Brunaud V., Aubourg S., Martin-Magniette M.-L., Robin S. and Colot V. (2011) Integrative epigenomic mapping defines four major chromatin types in Arabidopsis. EMBO J.

• Castells E., Molinier J., Genschick P., Drevensek S., Barneche F. & C. Bowler. (2010) det1-1 induced UV-C hyposensitivity through UVR3 and PHR1 photolyase overexpression. Plant Journal. Correspondance : barneche chez ens.fr

• Enfissi E.M., Barneche F., Ahmed I., Lopez E., Lichtlé C., McQuinn R., Giovannoni J., Bowler C., Bramley P. & P. Fraser. (2010) Transcriptomic and Metabolomic Characterisation of Nutritionally Enhanced Tomato Fruit Associated with the Fruit Specific Silencing of DE-ETIOLATED1 reveals links between primary and secondary metabolism. Plant Cell.