Séminaires bioinfo
Toutes les deux semaines le jeudi à 11h en salle Favard (46, rue d’Ulm), en dehors des vacances, la plateforme de Bioinformatique et l’équipe "Bio-imagerie Computationnelle et Bioinformatique" organisent un séminaire de bioinformatique (les thèmes abordés sont l’algorithmie, la méthodologie, la technologie, le développement de programmes, un travail en cours, etc.).
Pour recevoir un rappel pour le séminaire à venir, demandez à admin-bioclust chez bio.ens.psl.eu de vous ajouter à la mailing liste ’bioinfo-ens’.
La plupart des supports des précédents séminaires sont disponibles via le lien sur le titre du séminaire.
Attention, pour cela, la première fois, il faut :
- Créer un compte sur le gestionnaire de mailing list (avec l’adresse prenom.nom chez bio.ens.psl.eu pour les personnes de l’ENS)
- S’abonner à la mailing list (même si vous recevez déjà les mails)
Une fois connecté(e), vous pouvez retrouver le document que vous cherchez via le bouton Documents partagés.
Séminaires à venir
Date | Speaker(s) | Team | Title |
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Séminaires passés
2023 |
(4) |
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Date | Speaker(s) | Team | Title | Video | |
23/05/2023 | Jean-Philippe Proux | GENCI | GENCI Presentation | Video | |
23/03/2023 | Julien Mozziconacci | MNHN | Deep learning for genomics | Video | |
02/03/2023 | Manon Connault | IBENS | Presentation of Labex MemoLife cluster : Bioclust | Video | |
16/02/2023 | Alexandra Louis | IBENS | Introduction au Plan de Gestion de Données : Pourquoi et Comment ? | Video |
2022 |
(10) |
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Date | Speaker(s) | Team | Title | Video | |
01/12/2022 | Simon Tournier | Inserm U53 (UAR CNRS 2030, Université de Paris Cité) | Toward practical transparent verifiable and long-term reproducible research using Guix |
Video | |
17/11/2022 | Christophe Blanchet | IFB (Institut Français de Bioinformatique | Les Services Numériques de l’IFB pour les Sciences de la Vie | Video | |
16/06/2022 | Jeanne Bauduin | IBENS - Genome Organization and Dynamics Team (Hugues Roest Crollius) | (M2-rehearsal) Identification of conserved Regulatory Sequences in Ray-finned Fishes | Video | |
16/06/2022 | Ali Hamraoui | IBENS - Genomics Facility Team (Morgane Thomas-Chollier) | (M2-Rehearsal) -scRNA-seq with Nanopore sequencing : benchmark of approaches based on hybrid sequencing | Video | |
02/06/2022 | Julien Kot | IBENS - Experimental Evolutionary Genetics Team (Henrique Teotónio) | (M2- Rehearsal) - Determination and analysis of chromosomal rearrangements in the nematode worm Caenorhabditis elegans | Video | |
19/05/2022 | Nicolas Servant | Institut Curie | CUBIC : bioinformatics support for cancer biology | Video | |
21/04/2022 | Laurent Lacroix | IBENS ECR Team | Evaluating replication fork speed using nanopore sequencing | Video | |
07/04/2022 | Louna de Oliviera | IBENS GDEV Team | De Novo assembly of Arabidopsis thaliana genomes using Nanopore technology | Video | |
24/03/2022 | Anis Bourou | IBENS Bio Comp Team | Overview of Parallel Computing on GPUs | Video | |
10/03/2022 | Anthony Bretaudeau | (INRIA) | FAIR data analysis with Galaxy | Video |
2021 |
(13) |
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Date | Speaker(s) | Team | Title | Video | |
28/10/2021 | Ignacio Quintero | (BioDiv Team) | Using Julia for efficient numeric computations | Video | |
09/09/2021 | Anne-Cécile Orgerie | (Myriads team - IRISA) | Efficacité énergétique des infrastructures de calcul et de communication | ||
24/06/2021 | Lynda Messad | IBENS - RCE Group (O.Hyrien) | Use of nanopore sequencing for stalled/paused replication fork detection in yeast | ||
03/06/2021 | Etienne Jean | IBENS - RCE Group (O.Hyrien) | Workflow management with Nextflow | Video | |
20/05/2021 | Sophia Lambert | IBENS - BioDiv Group (Hélène Morlon) | Challenges in studying the macroevolution of microorganisms. | ||
07/05/2021 | Emilie Villar & Nathanaël Zweig | IBENS - MPB Group (Chris Bowler) | "Challenges and Technical choices on DiatOmicBase, an online tool to mine diatom omics" | Video | |
15/04/2021 | Ninon Burgos | Paris Brain Institute (ICM) - ARAMIS Lab | "Reproducible computer-aided diagnosis of Alzheimer’s disease using deep learning" | ||
01/04/2021 | Christophe Zimmer | Pasteur Institute - Department of Computational Biology | Computational imaging and modeling approaches for high resolution cell biology | ||
18/03/2021 | Leandro Quadrana | IBENS - A2E Team(Vincent Colot) | "Investigating transposable elements mobilization using population genomics data" | Video | |
04/03/2021 | Franklin Delehelle | IBENS - DYOGEN | When R & Python are not enough : high-performance bioinformatics with Rust" |
Video | |
12/02/2021 | Hervé Turlier | CIRB - Multiscale Physics of Morphogenesis | A reverse-engineering program of early embryo development combining computational and physical approaches | ||
21/01/2021 | Leandro Agudelo | MIT - Computer Science & Artificial Intelligence Lab | Disease resilience through tuning of genome plasticity | ||
07/01/2021 | Maël Lefeuvre | IBENS - Plateforme Informatique | Presentation of the Labex Memolife cluster and how to use it (simple and advanced usage of HT-Condor). | Video |
2014 |
(16) |
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Date | Speaker(s) | Team | Title |
11/12/2014 | F. Delestro | IBENS | Setting up a Virtual Environment together with an IPython Notebook workspace |
27/11/2014 | Elsa Bernard | Mines | Fast isoform detection from RNA-Seq data with network flow techniques |
16/10/2014 | Samuel Collombet | IBENS | ECCB 2014 : panorama of new softwares for the analysis of RNA isoforms from RNAseq |
02/10/2014 | E. Del Nery | Institut Curie | The BioPhenics screening facility, an exploration of opportunities and challenges facing image-based phenotypic discovery |
18/09/2014 | V. Sibut | Institut Curie | How do IPA can help you to discover the interactions between signaling pathways in cancer from omics data |
26/06/2014 | A. Lermine | Institut Curie | Galaxy |
19/06/2014 | P.-M. Chiaroni | IBENS | Computational analysis of ChIP-seq datasets to decipher the role of epigenetic factors in bone formation |
12/06/2014 | France Rose | IBENS | Développement d’algorithmes et d’outils d’analyse d’image pour l’étude de facteurs impliqués dans l’orientation de la division des cellules eucaryotes |
05/06/2014 | M. Kassam | IBENS | Introduction of Galaxy at the Computational biology and Bioinformatics platform of IBENS |
15/05/2014 | Alexandra Louis | IBENS | The computing cluster of the bioinformatic and computational biology platform at IBENS |
03/04/2014 | P. Hupé | Institut Curie | Bioinformatics for Operational Personalized Medicine in Oncology : application to the SHIVA clinical trial |
20/03/2014 | Paul-Gilloteaux |
Institut Curie | Managing microscopic image life cycle from acquisition to archiving, and including analysis : experience from Curie Data Center |
06/03/2014 | F. de Chaumont | Pasteur Institut | Icy |
06/02/2014 | Sophie Lemoine | IBENS | Comptage de lectures en fonction des annotations (par gene, par transcrit, ...) |
23/01/2014 | Laurent Jourdren | IBENS | Eoulsan : High Throughput Sequencing Data Analysis at Genomic Paris Centre |
09/01/2014 | S. Perrin | IBENS | Aozan : An automated post sequencing data processing pipeline |
2013 |
(4) |
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Date | Speaker(s) | Team | Title |
20/12/2013 | J. Ibn-Salem | Max Planck Institute | ChIP-exo data analysis for detecting protein-DNA interactions with high resolution |
12/12/2013 | Philippe Mailly | College de France | OMERO : an open-source software for the storage and manipulation of biological microscopy data |
28/11/2013 | Anne Danckaert | Pasteur Institute | Image in Microscopy : From Analysis to Statistics |
14/11/2013 | Samuel Collombet | IBENS | Circos, a visualization tool for genomic data |