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Publications

2017


2016


2015


2014


2013

  • Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra-Assunção JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida-King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Eliott D, Threadgold G, Harden G, Ware D, Mortimer B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi-Mohammadi M, Barr L, Martin S, Wray P, Ellington A, Matthews N, Ellwood M, Woodmansey R, Clark G, Cooper J, Tromans A, Grafham D, Skuce C, Pandian R, Andrews R, Harrison E, Kimberley A, Garnett J, Fosker N, Hall R, Garner P, Kelly D, Bird C, Palmer S, Gehring I, Berger A, Dooley CM, Ersan-Ürün Z, Eser C, Geiger H, Geisler M, Karotki L, Kirn A, Konantz J, Konantz M, Oberländer M, Rudolph-Geiger S, Teucke M, Osoegawa K, Zhu B, Rapp A, Widaa S, Langford C, Yang F, Carter NP, Harrow J, Ning Z, Herrero J, Searle SM, Enright A, Geisler R, Plasterk RH, Lee C, Westerfield M, de Jong PJ, Zon LI, Postlethwait JH, Nüsslein-Volhard C, Hubbard TJ, Roest Crollius H, Rogers J, Stemple DL. (2013) The zebrafish reference genome sequence and its relationship to the human genome. Nature. 496(7446):498-503.
  • Murigneux V., Saulière J., Roest Crollius H., Le Hir H. (2013) Transcriptome-wide identification of RNA binding sites by CLIP-seq. Methods 63(1):32-40
  • Louis, A., Muffato, M. Roest Crollius, H. (2013) Genomicus : five genome browsers for comparative genomics in eukaryota. Nucleic Acids Research 41(D1):D700-5


2012


2011


2010

  • Denoeud F., Henriet S., Mungpakdee S., Aury J.M., Da Silva C., Brinkmann H., Mikhaleva J., Olsen L.C., Jubin C., Cañestro C., Bouquet J.M., Danks G., Poulain J., Campsteijn C., Adamski M., Cross I., Yadetie F., Muffato M., Louis A., Butcher S., Tsagkogeorga G., Konrad A., Singh S., Jensen M.F., Cong E.H., Eikeseth-Otteraa H., Noel B., Anthouard V., Porcel B.M., Kachouri-Lafond R., Nishino A., Ugolini M., Chourrout P., Nishida H., Aasland R., Huzurbazar S., Westhof E., Delsuc F., Lehrach H., Reinhardt R., Weissenbach J., Roy S.W., Artiguenave F., Postlethwait J.H., Manak J.R., Thompson E.M., Jaillon O., Du Pasquier L., Boudinot P., Liberles D.A., Volff J.N., Philippe H., Lenhard B., Roest Crollius H., Wincker P., Chourrout D. (2010) Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate. Science. 330(6009):1381-5


2009


2008


2006


2004

  • Jaillon O., Aury JM., Brunet F., Petit JL., Stange-Thomann N., Mauceli E., Bouneau L., Fischer C.,Ozouf-Costaz C., Bernot A., Nicaud S., Jaffe D., Fisher S., Lutfalla G., Dossat C., Segurens B.,Dasilva C., Salanoubat M., Levy M., Boudet N., Castellano S., Anthouard V., Jubin C., Castelli V., Katinka M., Vacherie B., Biémont C., Skalli Z., Cattolico L., Poulain J., de Berardinis V., Cruaud C.,Duprat S., Brottier P., Coutanceau JP., Gouzy J., Parra G., Lardier G., Chapple C., McKernan KJ.,McEwan P., Bosak S., Kellis M., Volff JN., Guigó R., Zody MC., Mesirov J., Lindblad-Toh K.,Birren B., Nusbaum C., Kahn D., Robinson-Rechavi M., Laudet V., Schachter V., Quétier F., SaurinW., Scarpelli C., Wincker P., Lander ES., Weissenbach J., Roest Crollius H. (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the bony vertebrate proto-karyotype. Nature ; 431:946-957
  • Roest Crollius, H. and Weissenbach, J. (2005) Fish genomics and biology. Genome Research 15:1675-82.


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