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Publications

2017

Design of Light-Sensitive NMDARs by Genetically Encoded Photo-Cross-Linkers.
Tian M, Ye S
Methods Mol Biol. 2017. 1677:185-197.

Calibrated mitotic oscillator drives motile ciliogenesis.
Al Jord A, Shihavuddin A, Servignat d’Aout R, Faucourt M, Genovesio A, Karaiskou A, Sobczak‑Thépot J, Spassky N, Meunier A
Science. 2017 Oct 5.

Analysis of Claims that the Brain Extracellular Impedance Is High and Non-resistive.
Barbour B
Biophys J. 2017 Oct 3. 113(7):1636-1638.

P-Body Purification Reveals the Condensation of Repressed mRNA Regulons.
Hubstenberger A, Courel M, Bénard M, Souquere S, Ernoult‑Lange M, Chouaib R, Yi Z, Morlot JB, Munier A, Fradet M, Daunesse M, Bertrand E, Pierron G, Mozziconacci J, Kress M, Weil D
Mol Cell. 2017 Oct 5. 68(1):144-157.e5.

Evolution of gene expression after whole-genome duplication : New insights from the spotted gar genome.
Pasquier J, Braasch I, Batzel P, Cabau C, Montfort J, Nguyen T, Jouanno E, Berthelot C, Klopp C, Journot L, Postlethwait JH, Guiguen Y, Bobe J
J Exp Zool B Mol Dev Evol. 2017 Sep 25.

DNA methylation dynamics during early plant life.
Bouyer D, Kramdi A, Kassam M, Heese M, Schnittger A, Roudier F, Colot V
Genome Biol. 2017 Sep 25. 18(1):179.

Laser microdissection : A powerful tool for genomics at cell level.
Bevilacqua C, Ducos B
Mol Aspects Med. 2017 Sep 16.

Tangential migration of corridor guidepost neurons contributes to anxiety circuits.
Tinterri A, Deck M, Keita M, Mailhes C, Rubin AN, Kessaris N, Lokmane L, Bielle F, Garel S
J Comp Neurol. 2017 Sep 18.

Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction.
Ivanova C, Ramoni J, Aouam T, Frischmann A, Seiboth B, Baker SE, Le Crom S, Lemoine S, Margeot A, Bidard F
Biotechnol Biofuels. 2017. 10:209.

Differential cellular responses associated with oxidative stress and cell fate decision under nitrate and phosphate limitations in Thalassiosira pseudonana : Comparative proteomics.
Lin Q, Liang JR, Huang QQ, Luo CS, Anderson DM, Bowler C, Chen CP, Li XS, Gao YH
PLoS One. 2017. 12(9):e0184849.

Electrostatics of non-neutral biological microdomains.
Cartailler J, Schuss Z, Holcman D
Sci Rep. 2017 Sep 12. 7(1):11269.

Alpha subunit-dependent glycine receptor clustering and regulation of synaptic receptor numbers.
Patrizio A, Renner M, Pizzarelli R, Triller A, Specht CG
Sci Rep. 2017 Sep 7. 7(1):10899.

Endodermal germ-layer formation through active actin-driven migration triggered by N-cadherin.
Giger FA, David NB
Proc Natl Acad Sci U S A. 2017 Sep 19. 114(38):10143-10148.

Two loci single particle trajectories analysis : constructing a first passage time statistics of local chromatin exploration.
Shukron O, Hauer M, Holcman D
Sci Rep. 2017 Sep 4. 7(1):10346.

Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas.
Bal E, Park HS, Belaid‑Choucair Z, Kayserili H, Naville M, Madrange M, Chiticariu E, Hadj‑Rabia S, Cagnard N, Kuonen F, Bachmann D, Huber M, Le Gall C, Côté F, Hanein S, Rosti RÖ, Aslanger AD, Waisfisz Q, Bodemer C, Hermine O, Morice‑Picard F, Labeille B, Caux F, Mazereeuw‑Hautier J, Philip N, Levy N, Taieb A, Avril MF, Headon DJ, Gyapay G, Magnaldo T, Fraitag S, Crollius HR, Vabres P, Hohl D, Munnich A, Smahi A
Nat Med. 2017 Oct. 23(10):1226-1233.

Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin.
Bonnet A, Lambert G, Ernest S, Dutrieux FX, Coulpier F, Lemoine S, Lobbardi R, Rosa FM
Dev Cell. 2017 Sep 11. 42(5):527-541.e4.

Optical Control of Tumor Induction in the Zebrafish.
Feng Z, Nam S, Hamouri F, Aujard I, Ducos B, Vriz S, Volovitch M, Jullien L, Lin S, Weiss S, Bensimon D
Sci Rep. 2017 Aug 23. 7(1):9195.

Single molecule high-throughput footprinting of small and large DNA ligands.
Manosas M, Camunas‑Soler J, Croquette V, Ritort F
Nat Commun. 2017 Aug 21. 8(1):304.

Climate warming reduces gut microbiota diversity in a vertebrate ectotherm.
Bestion E, Jacob S, Zinger L, Di Gesu L, Richard M, White J, Cote J
Nat Ecol Evol. 2017 May 8. 1(6):161.

An RNAi Screen in a Novel Model of Oriented Divisions Identifies the Actin-Capping Protein Z β as an Essential Regulator of Spindle Orientation.
di Pietro F, Valon L, Li Y, Goïame R, Genovesio A, Morin X
Curr Biol. 2017 Aug 21. 27(16):2452-2464.e8.

Nerves, H2O2 and Shh : Three players in the game of regeneration.
Meda F, Rampon C, Dupont E, Gauron C, Mourton A, Queguiner I, Thauvin M, Volovitch M, Joliot A, Vriz S
Semin Cell Dev Biol. 2017 Aug 8.

A Method Based on Artificial Intelligence To Fully Automatize The Evaluation of Bovine Blastocyst Images.
Rocha JC, Passalia FJ, Matos FD, Takahashi MB, Ciniciato DS, Maserati MP, Alves MF, de Almeida TG, Cardoso BL, Basso AC, Nogueira MFG
Sci Rep. 2017 Aug 9. 7(1):7659.

Multi-scale tracking reveals scale-dependent chromatin dynamics after DNA damage.
Miné‑Hattab J, Recamier V, Izeddin I, Rothstein R, Darzacq X
Mol Biol Cell. 2017 Aug 9.

HEXIM1 Has Different Functions within Different RNA-Protein Complexes.
Bensaude O
Mol Cell. 2017 Aug 3. 67(3):357-359.

Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom.
McCarthy JK, Smith SR, McCrow JP, Tan M, Zheng H, Beeri K, Roth R, Lichtle C, Goodenough U, Bowler CP, Dupont CL, Allen AE
Plant Cell. 2017 Aug. 29(8):2047-2070.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.
Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M, Acinas SG, Royo‑Llonch M, Cornejo‑Castillo FM, Logares R, Fernández‑Gómez B, Bowler C, Cochrane G, Amid C, Hoopen PT, De Vargas C, Grimsley N, Desgranges E, Kandels‑Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL, Pesant S, Karsenti E, Wincker P
Sci Data. 2017 Aug 1. 4:170093.

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.
Thierion E, Le Men J, Collombet S, Hernandez C, Coulpier F, Torbey P, Thomas‑Chollier M, Noordermeer D, Charnay P, Gilardi‑Hebenstreit P
PLoS Genet. 2017 Jul. 13(7):e1006903.

Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries.
Boeva V, Louis‑Brennetot C, Peltier A, Durand S, Pierre‑Eugène C, Raynal V, Etchevers HC, Thomas S, Lermine A, Daudigeos‑Dubus E, Geoerger B, Orth MF, Grünewald TGP, Diaz E, Ducos B, Surdez D, Carcaboso AM, Medvedeva I, Deller T, Combaret V, Lapouble E, Pierron G, Grossetête‑Lalami S, Baulande S, Schleiermacher G, Barillot E, Rohrer H, Delattre O, Janoueix‑Lerosey I
Nat Genet. 2017 Sep. 49(9):1408-1413.

An ecological and digital epidemiology analysis on the role of human behavior on the 2014 Chikungunya outbreak in Martinique.
Roche B, Gaillard B, Léger L, Pélagie‑Moutenda R, Sochacki T, Cazelles B, Ledrans M, Blateau A, Fontenille D, Etienne M, Simard F, Salathé M, Yébakima A
Sci Rep. 2017 Jul 20. 7(1):5967.

Induced-Pluripotent-Stem-Cell-Derived Primitive Macrophages Provide a Platform for Modeling Tissue-Resident Macrophage Differentiation and Function.
Takata K, Kozaki T, Lee CZW, Thion MS, Otsuka M, Lim S, Utami KH, Fidan K, Park DS, Malleret B, Chakarov S, See P, Low D, Low G, Garcia‑Miralles M, Zeng R, Zhang J, Goh CC, Gul A, Hubert S, Lee B, Chen J, Low I, Shadan NB, Lum J, Wei TS, Mok E, Kawanishi S, Kitamura Y, Larbi A, Poidinger M, Renia L, Ng LG, Wolf Y, Jung S, Önder T, Newell E, Huber T, Ashihara E, Garel S, Pouladi MA, Ginhoux F
Immunity. 2017 Jul 18. 47(1):183-198.e6.

The evolution of diatoms and their biogeochemical functions.
Benoiston AS, Ibarbalz FM, Bittner L, Guidi L, Jahn O, Dutkiewicz S, Bowler C
Philos Trans R Soc Lond B Biol Sci. 2017 Sep 5. 372(1728).

Genetics and Epigenetics of Mating Type Determination in Paramecium and Tetrahymena.
Orias E, Singh DP, Meyer E
Annu Rev Microbiol. 2017 Sep 8. 71:133-156.

Climate warming : a loss of variation in populations can accompany reproductive shifts.
Massot M, Legendre S, Fédérici P, Clobert J
Ecol Lett. 2017 Sep. 20(9):1140-1147.

Genetic identification of a hindbrain nucleus essential for innate vocalization.
Hernandez‑Miranda LR, Ruffault PL, Bouvier JC, Murray AJ, Morin‑Surun MP, Zampieri N, Cholewa‑Waclaw JB, Ey E, Brunet JF, Champagnat J, Fortin G, Birchmeier C
Proc Natl Acad Sci U S A. 2017 Jul 25. 114(30):8095-8100.

Interannual cycles of Hantaan virus outbreaks at the human-animal interface in Central China are controlled by temperature and rainfall.
Tian H, Yu P, Cazelles B, Xu L, Tan H, Yang J, Huang S, Xu B, Cai J, Ma C, Wei J, Li S, Qu J, Laine M, Wang J, Tong S, Stenseth NC, Xu B
Proc Natl Acad Sci U S A. 2017 Jul 25. 114(30):8041-8046.

Multipotent peripheral glial cells generate neuroendocrine cells of the adrenal medulla.
Furlan A, Dyachuk V, Kastriti ME, Calvo‑Enrique L, Abdo H, Hadjab S, Chontorotzea T, Akkuratova N, Usoskin D, Kamenev D, Petersen J, Sunadome K, Memic F, Marklund U, Fried K, Topilko P, Lallemend F, Kharchenko PV, Ernfors P, Adameyko I
Science. 2017 Jul 7. 357(6346).

Loss of the canonical spindle orientation function in the Pins/LGN homolog AGS3.
Saadaoui M, Konno D, Loulier K, Goiame R, Jadhav V, Mapelli M, Matsuzaki F, Morin X
EMBO Rep. 2017 Sep. 18(9):1509-1520.

Physico-Pathologic Mechanisms Involved in Neurodegeneration : Misfolded Protein-Plasma Membrane Interactions.
Shrivastava AN, Aperia A, Melki R, Triller A
Neuron. 2017 Jul 5. 95(1):33-50.

High precision detection of conserved segments from synteny blocks.
Lucas JM, Roest Crollius H
PLoS One. 2017. 12(7):e0180198.

Myosin 7 and its adaptors link cadherins to actin.
Yu IM, Planelles‑Herrero VJ, Sourigues Y, Moussaoui D, Sirkia H, Kikuti C, Stroebel D, Titus MA, Houdusse A
Nat Commun. 2017 Jun 29. 8:15864.

Toward Universal Forward Genetics : Using a Draft Genome Sequence of the Nematode Oscheius tipulae To Identify Mutations Affecting Vulva Development.
Besnard F, Koutsovoulos G, Dieudonné S, Blaxter M, Félix MA
Genetics. 2017 Aug. 206(4):1747-1761.

The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility.
Jégu T, Veluchamy A, Ramirez‑Prado JS, Rizzi‑Paillet C, Perez M, Lhomme A, Latrasse D, Coleno E, Vicaire S, Legras S, Jost B, Rougée M, Barneche F, Bergounioux C, Crespi M, Mahfouz MM, Hirt H, Raynaud C, Benhamed M
Genome Biol. 2017 Jun 15. 18(1):114.

Cerebellar re-encoding of self-generated head movements.
Dugué GP, Tihy M, Gourévitch B, Léna C
Elife. 2017 Jun 13. 6.

Co-agonists differentially tune GluN2B-NMDA receptor trafficking at hippocampal synapses.
Ferreira JS, Papouin T, Ladépêche L, Yao A, Langlais VC, Bouchet D, Dulong J, Mothet JP, Sacchi S, Pollegioni L, Paoletti P, Oliet SHR, Groc L
Elife. 2017 Jun 9. 6.

Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana.
Snoek BL, Pavlova P, Tessadori F, Peeters AJM, Bourbousse C, Barneche F, de Jong H, Fransz PF, van Zanten M
G3 (Bethesda). 2017 Aug 7. 7(8):2519-2531.

Experimental Evolution with Caenorhabditis Nematodes.
Teotónio H, Estes S, Phillips PC, Baer CF
Genetics. 2017 Jun. 206(2):691-716.

RSAT matrix-clustering : dynamic exploration and redundancy reduction of transcription factor binding motif collections.
Castro‑Mondragon JA, Jaeger S, Thieffry D, Thomas‑Chollier M, van Helden J
Nucleic Acids Res. 2017 Jul 27. 45(13):e119.

Differentiation of Inflammation-Responsive Astrocytes from Glial Progenitors Generated from Human Induced Pluripotent Stem Cells.
Santos R, Vadodaria KC, Jaeger BN, Mei A, Lefcochilos‑Fogelquist S, Mendes APD, Erikson G, Shokhirev M, Randolph‑Moore L, Fredlender C, Dave S, Oefner R, Fitzpatrick C, Pena M, Barron JJ, Ku M, Denli AM, Kerman BE, Charnay P, Kelsoe JR, Marchetto MC, Gage FH
Stem Cell Reports. 2017 Jun 6. 8(6):1757-1769.

An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics.
Romano SA, Pérez‑Schuster V, Jouary A, Boulanger‑Weill J, Candeo A, Pietri T, Sumbre G
PLoS Comput Biol. 2017 Jun. 13(6):e1005526.

Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.
Collombet S, van Oevelen C, Sardina Ortega JL, Abou‑Jaoudé W, Di Stefano B, Thomas‑Chollier M, Graf T, Thieffry D
Proc Natl Acad Sci U S A. 2017 Jun 6. 114(23):5792-5799.

Functional Interactions between Newborn and Mature Neurons Leading to Integration into Established Neuronal Circuits.
Boulanger‑Weill J, Candat V, Jouary A, Romano SA, Pérez‑Schuster V, Sumbre G
Curr Biol. 2017 Jun 19. 27(12):1707-1720.e5.

Smooth 2D manifold extraction from 3D image stack.
Shihavuddin A, Basu S, Rexhepaj E, Delestro F, Menezes N, Sigoillot SM, Del Nery E, Selimi F, Spassky N, Genovesio A
Nat Commun. 2017 May 31. 8:15554.

Epithelial cell behaviours during neurosensory organ formation.
Kapsimali M
Development. 2017 Jun 1. 144(11):1926-1936.

Heterozygous Gnal Mice Are a Novel Animal Model with Which to Study Dystonia Pathophysiology.
Pelosi A, Menardy F, Popa D, Girault JA, Hervé D
J Neurosci. 2017 Jun 28. 37(26):6253-6267.

Neuroglobin Can Prevent or Reverse Glaucomatous Progression in DBA/2J Mice.
Cwerman‑Thibault H, Lechauve C, Augustin S, Roussel D, Reboussin É, Mohammad A, Degardin‑Chicaud J, Simonutti M, Liang H, Brignole‑Baudouin F, Maron A, Debeir T, Corral‑Debrinski M
Mol Ther Methods Clin Dev. 2017 Jun 16. 5:200-220.

Unreeling the chromatin thread : a genomic perspective on organization around the periphery of the Arabidopsis nucleus.
Barneche F, Baroux C
Genome Biol. 2017 May 23. 18(1):97.

Optocontrol of glutamate receptor activity by single side-chain photoisomerization.
Klippenstein V, Hoppmann C, Ye S, Wang L, Paoletti P
Elife. 2017 May 23. 6.

Evolutionary forces affecting synonymous variations in plant genomes.
Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S
PLoS Genet. 2017 May. 13(5):e1006799.

Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome.
Dorrell RG, Gile G, McCallum G, Méheust R, Bapteste EP, Klinger CM, Brillet‑Guéguen L, Freeman KD, Richter DJ, Bowler C
Elife. 2017 May 12. 6.

vConTACT : an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria.
Bolduc B, Jang HB, Doulcier G, You ZQ, Roux S, Sullivan MB
PeerJ. 2017. 5:e3243.

The Natural Biotic Environment of Caenorhabditis elegans.
Schulenburg H, Félix MA
Genetics. 2017 May. 206(1):55-86.

The genealogical decomposition of a matrix population model with applications to the aggregation of stages.
Bienvenu F, Akçay E, Legendre S, McCandlish DM
Theor Popul Biol. 2017 Jun. 115:69-80.

A mechanistic study of helicases with magnetic traps.
Hodeib S, Raj S, Manosas M, Zhang W, Bagchi D, Ducos B, Fiorini F, Kanaan J, Le Hir H, Allemand JF, Bensimon D, Croquette V
Protein Sci. 2017 Jul. 26(7):1314-1336.

The Emergence of the Spatial Structure of Tectal Spontaneous Activity Is Independent of Visual Inputs.
Pietri T, Romano SA, Pérez‑Schuster V, Boulanger‑Weill J, Candat V, Sumbre G
Cell Rep. 2017 May 2. 19(5):939-948.

High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43.
Rot G, Wang Z, Huppertz I, Modic M, Lenče T, Hallegger M, Haberman N, Curk T, von Mering C, Ule J
Cell Rep. 2017 May 2. 19(5):1056-1067.

Crop Fertilization Impacts Epidemics and Optimal Latent Period of Biotrophic Fungal Pathogens.
Précigout PA, Claessen D, Robert C
Phytopathology. 2017 Jun 21:PHYTO01170019R.

Flow cytometry sorting of nuclei enables the first global characterization of Paramecium germline DNA and transposable elements.
Guérin F, Arnaiz O, Boggetto N, Denby Wilkes C, Meyer E, Sperling L, Duharcourt S
BMC Genomics. 2017 Apr 26. 18(1):327.

An aggregation-removal model for the formation and size determination of post-synaptic scaffold domains.
Ranft J, Almeida LG, Rodriguez PC, Triller A, Hakim V
PLoS Comput Biol. 2017 Apr. 13(4):e1005516.

Study of gene expression alteration in male androgenetic alopecia : evidence of predominant molecular signaling pathways.
Michel L, Reygagne P, Benech P, Jean‑Louis F, Scalvino S, Ly Ka So S, Hamidou Z, Bianovici S, Pouch J, Ducos B, Bonnet M, Bensussan A, Patatian A, Lati E, Wdzieczak‑Bakala J, Choulot JC, Loing E, Hocquaux M
Br J Dermatol. 2017 Apr 12.

The development and functions of multiciliated epithelia.
Spassky N, Meunier A
Nat Rev Mol Cell Biol. 2017 Jul. 18(7):423-436.

Caenorhabditis elegans as a Model for Microbiome Research.
Zhang F, Berg M, Dierking K, Félix MA, Shapira M, Samuel BS, Schulenburg H
Front Microbiol. 2017. 8:485.

Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface.
Boulay AC, Saubaméa B, Adam N, Chasseigneaux S, Mazaré N, Gilbert A, Bahin M, Bastianelli L, Blugeon C, Perrin S, Pouch J, Ducos B, Le Crom S, Genovesio A, Chrétien F, Declèves X, Laplanche JL, Cohen‑Salmon M
Cell Discov. 2017. 3:17005.

Accelerated body size evolution during cold climatic periods in the Cenozoic.
Clavel J, Morlon H
Proc Natl Acad Sci U S A. 2017 Apr 18. 114(16):4183-4188.

Aozan : an automated post-sequencing data-processing pipeline.
Perrin S, Firmo C, Lemoine S, Le Crom S, Jourdren L
Bioinformatics. 2017 Jul 15. 33(14):2212-2213.

Clustering coefficient and periodic orbits in flow networks.
Rodríguez‑Méndez V, Ser‑Giacomi E, Hernández‑García E
Chaos. 2017 Mar. 27(3):035803.

Introduction to Focus Issue : Complex network perspectives on flow systems.
Donner RV, Hernández‑García E, Ser‑Giacomi E
Chaos. 2017 Mar. 27(3):035601.

On the evolutionary origins of equity.
Debove S, Baumard N, André JB
PLoS One. 2017. 12(3):e0173636.

Activity patterns of serotonin neurons underlying cognitive flexibility.
Matias S, Lottem E, Dugué GP, Mainen ZF
Elife. 2017 Mar 21. 6.

The retinoblastoma homolog RBR1 mediates localization of the repair protein RAD51 to DNA lesions in Arabidopsis.
Biedermann S, Harashima H, Chen P, Heese M, Bouyer D, Sofroni K, Schnittger A
EMBO J. 2017 May 2. 36(9):1279-1297.

Epigenetic memory and cell fate reprogramming in plants.
Birnbaum KD, Roudier F
Regeneration (Oxf). 2017 Feb. 4(1):15-20.

Mutations in the Spliceosome Component CWC27 Cause Retinal Degeneration with or without Additional Developmental Anomalies.
Xu M, Xie YA, Abouzeid H, Gordon CT, Fiorentino A, Sun Z, Lehman A, Osman IS, Dharmat R, Riveiro‑Alvarez R, Bapst‑Wicht L, Babino D, Arno G, Busetto V, Zhao L, Li H, Lopez‑Martinez MA, Azevedo LF, Hubert L, Pontikos N, Eblimit A, Lorda‑Sanchez I, Kheir V, Plagnol V, Oufadem M, Soens ZT, Yang L, Bole‑Feysot C, Pfundt R, Allaman‑Pillet N, Nitschké P, Cheetham ME, Lyonnet S, Agrawal SA, Li H, Pinton G, Michaelides M, Besmond C, Li Y, Yuan Z, von Lintig J, Webster AR, Le Hir H, Stoilov P, Amiel J, Hardcastle AJ, Ayuso C, Sui R, Chen R, Allikmets R, Schorderet DF
Am J Hum Genet. 2017 Apr 6. 100(4):592-604.

Modelling plankton ecosystems in the meta-omics era. Are we ready ?
Stec KF, Caputi L, Buttigieg PL, D’Alelio D, Ibarbalz FM, Sullivan MB, Chaffron S, Bowler C, Ribera d’Alcalà M, Iudicone D
Mar Genomics. 2017 Apr. 32:1-17.

Understanding bias in DNA repair.
Strick TR, Savery NJ
Proc Natl Acad Sci U S A. 2017 Mar 14. 114(11):2791-2793.

Structural Alteration of OmpR as a Source of Ertapenem Resistance in a CTX-M-15-Producing Escherichia coli O25b:H4 Sequence Type 131 Clinical Isolate.
Dupont H, Choinier P, Roche D, Adiba S, Sookdeb M, Branger C, Denamur E, Mammeri H
Antimicrob Agents Chemother. 2017 May. 61(5).

Utilization of interferometric light microscopy for the rapid analysis of virus abundance in a river.
Roose‑Amsaleg C, Fedala Y, Vénien‑Bryan C, Garnier J, Boccara AC, Boccara M
Res Microbiol. 2017 Jun. 168(5):413-418.

Molecular Mechanisms of Bipolar Disorder : Progress Made and Future Challenges.
Kim Y, Santos R, Gage FH, Marchetto MC
Front Cell Neurosci. 2017. 11:30.

Neurons derived from patients with bipolar disorder divide into intrinsically different sub-populations of neurons, predicting the patients’ responsiveness to lithium.
Stern S, Santos R, Marchetto MC, Mendes AP, Rouleau GA, Biesmans S, Wang QW, Yao J, Charnay P, Bang AG, Alda M, Gage FH
Mol Psychiatry. 2017 Feb 28.

Oxidation of F-actin controls the terminal steps of cytokinesis.
Frémont S, Hammich H, Bai J, Wioland H, Klinkert K, Rocancourt M, Kikuti C, Stroebel D, Romet‑Lemonne G, Pylypenko O, Houdusse A, Echard A
Nat Commun. 2017 Feb 23. 8:14528.

Recent progress in diatom genomics and epigenomics.
Tirichine L, Rastogi A, Bowler C
Curr Opin Plant Biol. 2017 Apr. 36:46-55.

Direct conversion of root primordium into shoot meristem relies on timing of stem cell niche development.
Rosspopoff O, Chelysheva L, Saffar J, Lecorgne L, Gey D, Caillieux E, Colot V, Roudier F, Hilson P, Berthomé R, Da Costa M, Rech P
Development. 2017 Apr 1. 144(7):1187-1200.

Visualization of Chromatin Decompaction and Break Site Extrusion as Predicted by Statistical Polymer Modeling of Single-Locus Trajectories.
Amitai A, Seeber A, Gasser SM, Holcman D
Cell Rep. 2017 Jan 31. 18(5):1200-1214.

A noninvasive optical approach for assessing chloride extrusion activity of the K-Cl cotransporter KCC2 in neuronal cells.
Ludwig A, Rivera C, Uvarov P
BMC Neurosci. 2017 Jan 31. 18(1):23.

The hypothalamic NPVF circuit modulates ventral raphe activity during nociception.
Madelaine R, Lovett‑Barron M, Halluin C, Andalman AS, Liang J, Skariah GM, Leung LC, Burns VM, Mourrain P
Sci Rep. 2017 Jan 31. 7:41528.

Differential Routing of Mindbomb1 via Centriolar Satellites Regulates Asymmetric Divisions of Neural Progenitors.
Tozer S, Baek C, Fischer E, Goiame R, Morin X
Neuron. 2017 Feb 8. 93(3):542-551.e4.

Insights into the design and interpretation of iCLIP experiments.
Haberman N, Huppertz I, Attig J, König J, Wang Z, Hauer C, Hentze MW, Kulozik AE, Le Hir H, Curk T, Sibley CR, Zarnack K, Ule J
Genome Biol. 2017 Jan 16. 18(1):7.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV
Nature. 2017 Jan 26. 541(7638):536-540.

The crystal structure of the 5΄ functional domain of the transcription riboregulator 7SK.
Martinez‑Zapien D, Legrand P, McEwen AG, Proux F, Cragnolini T, Pasquali S, Dock‑Bregeon AC
Nucleic Acids Res. 2017 Apr 7. 45(6):3568-3579.

IGF-1 Induces GHRH Neuronal Axon Elongation during Early Postnatal Life in Mice.
Decourtye L, Mire E, Clemessy M, Heurtier V, Ledent T, Robinson IC, Mollard P, Epelbaum J, Meaney MJ, Garel S, Le Bouc Y, Kappeler L
PLoS One. 2017. 12(1):e0170083.

Histone degradation in response to DNA damage enhances chromatin dynamics and recombination rates.
Hauer MH, Seeber A, Singh V, Thierry R, Sack R, Amitai A, Kryzhanovska M, Eglinger J, Holcman D, Owen‑Hughes T, Gasser SM
Nat Struct Mol Biol. 2017 Feb. 24(2):99-107.

Early Commissural Diencephalic Neurons Control Habenular Axon Extension and Targeting.
Beretta CA, Dross N, Guglielmi L, Bankhead P, Soulika M, Gutierrez‑Triana JA, Paolini A, Poggi L, Falk J, Ryu S, Kapsimali M, Engel U, Carl M
Curr Biol. 2017 Jan 23. 27(2):270-278.

Proteomic analysis of the Rett syndrome experimental model mecp2Q63X mutant zebrafish.
Cortelazzo A, Pietri T, De Felice C, Leoncini S, Guerranti R, Signorini C, Timperio AM, Zolla L, Ciccoli L, Hayek J
J Proteomics. 2017 Feb 10. 154:128-133.

Preparation of DNA Substrates and Functionalized Glass Surfaces for Correlative Nanomanipulation and Colocalization (NanoCOSM) of Single Molecules.
Duboc C, Fan J, Graves ET, Strick TR
Methods Enzymol. 2017. 582:275-296.

Early born neurons are abnormally positioned in the doublecortin knockout hippocampus.
Khalaf‑Nazzal R, Stouffer MA, Olaso R, Muresan L, Roumegous A, Lavilla V, Carpentier W, Moutkine I, Dumont S, Albaud B, Cagnard N, Roest Crollius H, Francis F
Hum Mol Genet. 2017 Jan 1. 26(1):90-108.

A Unifying Comparative Phylogenetic Framework Including Traits Coevolving Across Interacting Lineages.
Manceau M, Lambert A, Morlon H
Syst Biol. 2017 Jul 1. 66(4):551-568.

Uncovering Higher-Taxon Diversification Dynamics from Clade Age and Species-Richness Data.
Sánchez‑Reyes LL, Morlon H, Magallón S
Syst Biol. 2017 May 1. 66(3):367-378.

Whole-GUV patch-clamping.
Garten M, Mosgaard LD, Bornschlögl T, Dieudonné S, Bassereau P, Toombes GE
Proc Natl Acad Sci U S A. 2017 Jan 10. 114(2):328-333.

Physiology : Mechanosensor of lung inflation identified.
Goridis C
Nature. 2017 Jan 12. 541(7636):165-166.

mTORC1 signaling and primary cilia are required for brain ventricle morphogenesis.
Foerster P, Daclin M, Asm S, Faucourt M, Boletta A, Genovesio A, Spassky N
Development. 2017 Jan 15. 144(2):201-210.

Heritable expansion of the genetic code in mouse and zebrafish.
Chen Y, Ma J, Lu W, Tian M, Thauvin M, Yuan C, Volovitch M, Wang Q, Holst J, Liu M, Vriz S, Ye S, Wang L, Li D
Cell Res. 2017 Feb. 27(2):294-297.

Strain-specific impact of the high-pathogenicity island on virulence in extra-intestinal pathogenic Escherichia coli.
Smati M, Magistro G, Adiba S, Wieser A, Picard B, Schubert S, Denamur E
Int J Med Microbiol. 2017 Jan. 307(1):44-56.

A Transcription Factor Pulse Can Prime Chromatin for Heritable Transcriptional Memory.
Iberg‑Badeaux A, Collombet S, Laurent B, van Oevelen C, Chin KK, Thieffry D, Graf T, Shi Y
Mol Cell Biol. 2017 Feb 15. 37(4).

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation.
Love MI, Huska MR, Jurk M, Schöpflin R, Starick SR, Schwahn K, Cooper SB, Yamamoto KR, Thomas‑Chollier M, Vingron M, Meijsing SH
Nucleic Acids Res. 2017 Feb 28. 45(4):1805-1819.

Whole genome DNA methylation : beyond genes silencing.
Tirado‑Magallanes R, Rebbani K, Lim R, Pradhan S, Benoukraf T
Oncotarget. 2017 Jan 17. 8(3):5629-5637.

Progressive and Biased Divergent Evolution Underpins the Origin and Diversification of Peridinin Dinoflagellate Plastids.
Dorrell RG, Klinger CM, Newby RJ, Butterfield ER, Richardson E, Dacks JB, Howe CJ, Nisbet ER, Bowler C
Mol Biol Evol. 2017 Feb 1. 34(2):361-379.

Analysis of Small RNA Populations Using Hybridization to DNA Tiling Arrays.
Boccara M, Sarazin A, Billoud B, Bulski A, Chapell L, Baulcombe D, Colot V
Methods Mol Biol. 2017. 1456:127-139.

BRD4 localization to lineage-specific enhancers is associated with a distinct transcription factor repertoire.
Najafova Z, Tirado‑Magallanes R, Subramaniam M, Hossan T, Schmidt G, Nagarajan S, Baumgart SJ, Mishra VK, Bedi U, Hesse E, Knapp S, Hawse JR, Johnsen SA
Nucleic Acids Res. 2017 Jan 9. 45(1):127-141.

GABAergic Microcircuits in Alzheimer’s Disease Models.
Villette V, Dutar P
Curr Alzheimer Res. 2017. 14(1):30-39.

Mammalian microRNAs and long noncoding RNAs in the host-bacterial pathogen crosstalk.
Duval M, Cossart P, Lebreton A
Semin Cell Dev Biol. 2017 May. 65:11-19.

Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms.
Bussard A, Corre E, Hubas C, Duvernois‑Berthet E, Le Corguillé G, Jourdren L, Coulpier F, Claquin P, Lopez PJ
Environ Microbiol. 2017 Mar. 19(3):909-925.

RNA- and protein-mediated control of Listeria monocytogenes virulence gene expression.
Lebreton A, Cossart P
RNA Biol. 2017 May 4. 14(5):460-470.

Microglia control the glycinergic but not the GABAergic synapses via prostaglandin E2 in the spinal cord.
Cantaut‑Belarif Y, Antri M, Pizzarelli R, Colasse S, Vaccari I, Soares S, Renner M, Dallel R, Triller A, Bessis A
J Cell Biol. 2017 Sep 4. 216(9):2979-2989.

History of research on C. elegans and other free-living nematodes as model organisms.
Nigon VM, Félix MA
WormBook. 2017 Sep 7:1-84.