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Publications

BioRxiv

The contribution of mutation to variation in temperature-dependent sprint speed in zebrafish, Danio rerio
Christina L, Miller, Derek, Sun, Lauren H, Thornton, Katrina, McGuigan
BioRxiv.

Primate sympatry shapes the evolution of their brain architecture
Benjamin, Robira, Benoît, Perez‑Lamarque
BioRxiv.

svep1 and tie1 genetically interact and affect aspects of facial lymphatic development in a Vegfc-independent manner
Melina, Hußmann, Sarah, Weischer, Claudia, Carlantoni, Didier Y. R., Stainier, Thomas, Zobel, Stefan, Schulte‑Merker
BioRxiv.

DREAMS : Deep Read-level Error Model for Sequencing data applied to low-frequency variant calling and circulating tumor DNA detection
Mikkel H., Christensen, Simon, Drue, Mads H., Rasmussen, Amanda, Frydendahl, Iben, Lyskjær, Christina, Demuth, Jesper, Nors, Kåre A., Gotschalck, Lene H., Iversen, Claus L., Andersen, Jakob Skou, Pedersen
BioRxiv.

Deep Learning from Phylogenies for Diversification Analyses
Sophia, Lambert, Jakub, Voznica, Hélène, Morlon
BioRxiv.

DNA methylation at a single cytosine embedded in the W-box cis-element repels binding of WRKY transcription factors through steric hindrance
Magali, Charvin, Thierry, Halter, Romain, Blanc‑Mathieu, Pierre, Barraud, Magali, Aumont‑Nicaise, François, Parcy, Lionel, Navarro
BioRxiv.

Global observation of plankton communities from space
Hiroto, Kaneko, Hisashi, Endo, Nicolas, Henry, Cédric, Berney, Frédéric, Mahé, Julie, Poulain, Karine, Labadie, Odette, Beluche, Roy, El Hourany, Samuel, Chaffron, Patrick, Wincker, Ryosuke, Nakamura, Lee, Karp‑Boss, Emmanuel, Boss, Chris, Bowler, Colomban, de Vargas, Kentaro, Tomii, Hiroyuki, Ogata
BioRxiv.

Cross-modal Graph Contrastive Learning with Cellular Images
Shuangjia, Zheng, Jiahua, Rao, Jixian, Zhang, Ethan, Cohen, Chengtao, Li, Yuedong, Yang
BioRxiv.

Do closely related species interact with similar partners ? Testing for phylogenetic signal in bipartite interaction networks
Benoît, Perez‑Lamarque, Odile, Maliet, Benoît, Pichon, Marc‑André, Selosse, Florent, Martos, Hélène, Morlon
BioRxiv.

The filipodia-like protrusions of adjacent somatic cells shape the developmental potential of mouse oocytes
Flora, Crozet, Gaëlle, Letort, Christelle, Da Silva, Adrien, Eichmuller, Anna Francesca, Tortorelli, Morgane, Belle, Julien, Dumont, Tristan, Piolot, Aurélien, Dauphin, Fanny, Coulpier, Alain, Chédotal, Jean‑Léon, Maître, Marie‑Hélène, Verlhac, Hugh.J, Clarke, Marie‑Emilie, Terret
BioRxiv.

CTNND2 moderates neuronal excitation and links human evolution to prolonged synaptic development in the neocortex
Nora, Assendorp, Marine, Depp, Matteo, Fossati, Florent, Dingli, Damarys, Loew, Cécile, Charrier
BioRxiv.

CLT-seq as a universal homopolymer-sequencing concept reveals poly(A)-tail-tuned ncRNA regulation
Qiang, Su, Yi, Long, Jun, Wang, Deming, Gou
BioRxiv.

Nuclear basket protein ZC3HC1 and its yeast homolog Pml39p feature an evolutionary conserved bimodular construction essential for initial binding to NPC-anchored homologs of scaffold protein TPR
Philip, Gunkel, Haruki, Iino, Sandra, Krull, Volker C., Cordes
BioRxiv.

STAT3 promotes RNA polymerase III-directed transcription by controlling the miR-106a-5p/TP73 axis
Cheng, Zhang, Shahsha, Zhao, Huan, Deng, Shihua, Zhang, Juan, Wang, Xiaoye, Song, Deen, Yu, Yue, Zhang, Wensheng, Deng
BioRxiv.

A Plastidial Glycolytic-Gluconeogenic Switch of Mitochondrial Origin Enables Diatom Adaptations to High Latitudes
Richard G., Dorrell, Yue, Liang, Nolwenn, Gueguen, Tomomi, Nonoyama, Youjun, Zhang, Dany, Croteau, Mathias, Penot, Sandrine, Adiba, Benjamin, Bailleul, Valérie, Gros, Juan José Pierella, Karlusich, Nathanaël, Zweig, Alisdair R., Fernie, Juliette, Jouhet, Eric, Maréchal, Chris, Bowler
BioRxiv.

Generation of floxed alleles for cell-specific knockout in zebrafish
Masahiro, Shin, Takayuki, Nozaki, Benjamin, Toles, Amy, Kolb, Kevin, Luk, Sumio, Isogai, Kinji, Ishida, Tomohito, Hanasaka, Michael J., Parsons, Scot A., Wolfe, Nathan D., Lawson
BioRxiv.

Variable effects on virulence of bacteriophage resistance mechanisms in extraintestinal pathogenic Escherichia coli
Baptiste, Gaborieau, Raphaëlle, Delattre, Sandrine, Adiba, Olivier, Clermont, Erick, Denamur, Jean‑Damien, Ricard, Laurent, Debarbieux
BioRxiv.

Comparing different computational approaches for detecting long-term vertical transmission in host-associated microbiota
Benoît, Perez‑Lamarque, Hélène, Morlon
BioRxiv.

Label-free virus-antibody interaction monitoring in real time by common-path interferometry
Samer, Alhaddad, Houda, Bey, Olivier, Thouvenin, Pascale, Boulanger, Claude, Boccara, Ignacio, Izeddin, Martine, Boccara
BioRxiv.

The Nematode Oscheius tipulae as A Genetic Model for Programmed DNA Elimination
Thomas C., Dockendorff, Brandon, Estrem, Jordan, Reed, James R., Simmons, Sobhan Bahrami, Zadegan, Maxim V., Zagoskin, Vincent, Terta, Erin, Seaberry, Jianbin, Wang
BioRxiv.

Combining DNA scaffolds and acoustic force spectroscopy to characterize individual protein bonds
Yong Jian, Wang, Claire, Valotteau, Adrien, Aimard, Lorenzo, Villanueva, Dorota, Kostrz, Maryne, Follenfant, Terence, Strick, Patrick, Chames, Felix, Rico, Charlie, Gosse, Laurent, Limozin
BioRxiv.

The birth-death diffusion leading to present-day Mammal diversity
Ignacio, Quintero, Nicolas, Lartillot, Hélène, Morlon
BioRxiv.

Estimating the age of poorly dated fossil specimens and deposits using a total-evidence approach and the fossilized birth-death process
Joëlle, Barido‑Sottani, Dagmara, Żyła, Tracy A., Heath
BioRxiv.

Artificial selection of communities drives the emergence of structured interactions
Jules, Fraboul, Giulio, Biroli, Silvia, De Monte
BioRxiv.

RNA-protein interactome at the Hepatitis E virus internal ribosome entry site
Shiv, Kumar, Rohit, Verma, Sandhini, Saha, Ashish, Agrahari, Shivangi, Shukla, Anurag, Tushar Kanti, Maiti, Shailendra, Asthana, C.T., Ranjith‑Kumar, Milan, Surjit
BioRxiv.

Insights into the diversity and function of DNA methyltransferases in microeukaryotes using the model diatom Phaeodactylum tricornutum
Antoine, Hoguin, Feng, Yang, Agnès, Groisillier, Chris, Bowler, Auguste, Genovesio, Ouardia, Ait‑Mohamed, Fabio Rocha Jimenez, Vieira, Leila, Tirichine
BioRxiv.

An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
Elise, Parey, Alexandra, Louis, Jérôme, Montfort, Yann, Guiguen, Hugues Roest, Crollius, Camille, Berthelot
BioRxiv.

Human-environment feedback and the consistency of proenvironmental behaviour
Claire, Ecotière, Sylvain, Billiard, Jean‑Baptiste, André, Pierre, Collet, Régis, Ferrière, Sylvie, Méléard
BioRxiv.

Annexin A1 is a polarity cue that directs planar mitotic spindle orientation during mammalian epithelial morphogenesis
Maria, Fankhaenel, Farahnaz Sadat Golestan, Hashemi, Larissa, Mourao, Emily, Lucas, Manal Mosa, Hosawi, Paul, Skipp, Xavier, Morin, Colinda L.G.J., Scheele, Salah, Elias
BioRxiv.

Putting the F in FBD analyses : tree constraints or morphological data ?
Joëlle, Barido‑Sottani, Alexander, Pohle, Kenneth, De Baets, Duncan, Murdock, Rachel C. M., Warnock
BioRxiv.

Protein as evolvable functionally-constrained amorphous matter
Madhusmita, Tripathy, Anand, Srivastava, Srikanth, Sastry, Madan, Rao
BioRxiv.

Bottlenecks can constrain and channel evolutionary paths
Jasmine, Gamblin, Sylvain, Gandon, François, Blanquart, Amaury, Lambert
BioRxiv.

Morphological and sensorimotor phenotypes in a zebrafish CHARGE syndrome model are domain-dependent
Dana R., Hodorovich, Patrick M., Lindsley, Austen A., Berry, Derek F., Burton, Kurt C., Marsden
BioRxiv.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition
Anastasia, Barkova, Indranil, Adhya, Christine, Conesa, Amna, Asif‑Laidin, Amandine, Bonnet, Elise, Rabut, Carine, Chagneau, Pascale, Lesage, Joël, Acker
BioRxiv.

Metabolic shift toward ketosis in asocial cavefish increases social-like collective behavior
Motoko, Iwashita, Amity, Tran, Miki, Wong, Devanne, Burbano, Ryan, Lee, Masato, Yoshizawa
BioRxiv.

Nementin is a Nematode-Selective Small Molecule Agonist of Neurotransmitter Release
Sean, Harrington, Jessica J., Knox, Andrew R., Burns, Ken‑Loon, Choo, Aaron, Au, Megan, Kitner, Cecile, Haeberli, Jacob, Pyche, Cassandra, D’Amata, Yong‑Hyun, Kim, Jonathan R., Volpatti, Maximillano, Guiliani, Jamie, Snider, Victoria, Wong, Bruna M., Palmeira, Elizabeth M., Redman, Aditya S., Vaidya, John S., Gilleard, Igor, Stagljar, Sean R., Cutler, Daniel, Kulke, James J., Dowling, Christopher M., Yip, Jennifer, Keiser, Inga, Zasada, Mark, Lautens, Peter J., Roy
BioRxiv.

Prox2+ and Runx3+ neurons regulate esophageal motility
Elijah D., Lowenstein, Pierre‑Louis, Ruffault, Aristotelis, Misios, Kate L., Osman, Huimin, Li, Rebecca, Thompson, Kun, Song, Stephan, Dietrich, Xun, Li, Nikita, Vladimirov, Jean‑François, Brunet, Andrew, Woehler, Niccolò, Zampieri, Ralf, Kühn, Shiqi, Jia, Gary R., Lewin, Nikolaus, Rajewsky, Teresa E., Lever, Carmen, Birchmeier
BioRxiv.

Regulation of oxidative phosphorylation by Nuclear myosin 1 protects cells from metabolic reprogramming and tumorigenesis in mice
Tomas, Venit, Oscar, Sapkota, Wael Said, Abdrabou, Palanikumar, Loganathan, Renu, Pasricha, Syed Raza, Mahmood, Nadine Hosny, El Said, Sneha, Thomas, Youssef, Idaghdour, Mazin, Magzoub, Piergiorgio, Percipalle
BioRxiv.

Photoinduced Isomerization Sampling of Retinal in Bacteriorhodopsin
Zhong, Ren
BioRxiv.

The role of histone acetyltransferases Gcn5 and Esa1 in recruiting the RSC complex and maintaining nucleosome-depleted regions genome-wide in Saccharomyces cerevisiae
Emily, Biernat, Mansi, Verma, Matthew, Werick, Uzair, Khan, Sama, Joseph, Chhabi K., Govind
BioRxiv.

Revealing invisible cell phenotypes with conditional generative modeling
Alexis, Lamiable, Tiphaine, Champetier, Francesco, Leonardi, Ethan, Cohen, Peter, Sommer, David, Hardy, Nicolas, Argy, Achille, Massougbodji, Elaine, Del Nery, Gilles, Cottrell, Yong‑Jun, Kwon, Auguste, Genovesio
BioRxiv.

Beta oscillations and waves in motor cortex can be accounted for by the interplay of spatially-structured connectivity and fluctuating inputs
Ling, Kang, Jonas, Ranft, Vincent, Hakim
BioRxiv.

Mechanotransductive feedback control of endothelial cell motility and vascular morphogenesis
Devon E., Mason, Megan, Goeckel, Sebastián L., Vega, Pei‑Hsun, Wu, Dymonn, Johnson, Su‑Jin, Heo, Denis, Wirtz, Jason A., Burdick, Levi, Wood, Brian Y., Chow, Amber N., Stratman, Joel D., Boerckel
BioRxiv.

Evolving social behaviour through selection of single-cell adhesion in Dictyostelium discoideum
Sandrine, Adiba, Mathieu, Forget, Silvia, De Monte
BioRxiv.

Context- and scale-dependent effects of thymol bioactivity on biological networks : contributions from quail under heat stress
Maria Emilia, Fernandez, Rocío Inés, Bonansea, Agustin Lucini, Mas, María Verónica, Baroni, Raul Hector, Marin, Maria Carla, Labaque, Jackelyn M., Kembro
BioRxiv.

Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths
Jean‑Michel, Arbona, Hadi, Kabalane, Arach, Goldar, Olivier, Hyrien, Benjamin, Audit
BioRxiv.

The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and 5’ transcript length determination in Arabidopsis
Borja, Diego‑Martin, Jaime, Pérez‑Alemany, Joan, Candela‑Ferre, Antonio, Corbalán‑Acedo, Juan, Pereyra, David, Alabadí, Yasaman, Jami‑Alahmadi, James, Wohlschlegel, Javier, Gallego‑Bartolomé
BioRxiv.

Immune gene variation associated with chromosome-scale differences among individual zebrafish genomes
Sean C., McConnell, Kyle M., Hernandez, Jorge, Andrade, Jill L.O., de Jong
BioRxiv.

Postnatal developmental trajectory of sex-biased gene expression in the mouse pituitary gland
Huayun, Hou, Cadia, Chan, Kyoko E., Yuki, Dustin, Sokolowski, Anna, Roy, Rihao, Qu, Liis, Uusküla‑Reimand, Mariela, Faykoo‑Martinez, Matt, Hudson, Christina, Corre, Anna, Goldenberg, Zhaolei, Zhang, Mark R., Palmert, Michael D., Wilson
BioRxiv.

Viral transduction and the dynamics of bacterial adaptation
Philippe, Cherabier, Sylvie, Méléard, Régis, Ferrière
BioRxiv.

A Role for Nup153 in Nuclear Assembly Reveals Differential Requirements for Targeting of Nuclear Envelope Constituents
Dollie, LaJoie, Ayse M., Turkmen, Douglas R., Mackay, Christopher C., Jensen, Vasilisa, Aksenova, Maho, Niwa, Mary, Dasso, Katharine S., Ullman
BioRxiv.

Zur and Zinc Increase Expression of E. coli Ribosomal Protein L31 Through RNA-Mediated Repression of the Repressor L31p
Rebecca A., Rasmussen, Jeannie M., Camarillo, Victoria, Sosnowski, Byoung‑Kyu, Cho, Young Ah, Goo, Julius B., Lucks, Thomas V., O’Halloran
BioRxiv.

Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
Fabien, Lombard, Guillaume, Bourdin, Stéphane, Pesant, Sylvain, Agostini, Alberto, Baudena, Emilie, Boissin, Nicolas, Cassar, Megan, Clampitt, Pascal, Conan, Ophélie Da, Silva, Céline, Dimier, Eric, Douville, Amanda, Elineau, Jonathan, Fin, J. Michel, Flores, Jean François, Ghiglione, Benjamin C.C., Hume, Laetitia, Jalabert, Seth G., John, Rachel L., Kelly, Ilan, Koren, Yajuan, Lin, Dominique, Marie, Ryan, McMinds, Zoé, Mériguet, Nicolas, Metzl, David A., Paz‑García, Maria Luiza, Pedrotti, Julie, Poulain, Mireille, Pujo‑Pay, Joséphine, Ras, Gilles, Reverdin, Sarah, Romac, Alice, Rouan, Eric, Röttinger, Assaf, Vardi, Christian R., Voolstra, Clémentine, Moulin, Guillaume, Iwankow, Bernard, Banaigs, Chris, Bowler, Colomban, de Vargas, Didier, Forcioli, Paola, Furla, Pierre E., Galand, Eric, Gilson, Stéphanie, Reynaud, Shinichi, Sunagawa, Matthew B., Sullivan, Olivier, Thomas, Romain, Troublé, Rebecca Vega, Thurber, Patrick, Wincker, Didier, Zoccola, Denis, Allemand, Serge, Planes, Emmanuel, Boss, Gaby, Gorsky
BioRxiv.

Whole-genome scanning reveals selection mechanisms in epipelagic Chaetoceros diatom populations
Charlotte, Nef, Mohammed‑Amin, Madoui, Éric, Pelletier, Chris, Bowler
BioRxiv.

Pervasive gene duplications as a major evolutionary driver of coral biology
Benjamin, Noel, France, Denoeud, Alice, Rouan, Carol, Buitrago‑López, Laura, Capasso, Julie, Poulain, Emilie, Boissin, Mélanie, Pousse, Corinne, Da Silva, Arnaud, Couloux, Eric, Armstrong, Quentin, Carradec, Corinne, Cruaud, Karine, Labadie, Julie, Lê‑Hoang, Sylvie, Tambutté, Valérie, Barbe, Clémentine, Moulin, Guillaume, Bourdin, Guillaume, Iwankow, Sarah, Romac, Denis, Allemand, Serge, Planes, Eric, Gilson, Didier, Zoccola, Patrick, Wincker, Christian R, Voolstra, Jean‑Marc, Aury
BioRxiv.

tRNA Methylation Resolves Codon Usage Bias at the Limit of Cell Viability
Isao, Masuda, Yuka, Yamaki, Rajesh, Detroja, Somnath, Tagore, Henry, Moore, Sunita, Maharjan, Yuko, Nakano, Thomas, Christian, Ryuma, Matsubara, Todd, Lowe, Milana, Frenkel‑Morgenstern, Ya‑Ming, Hou
BioRxiv.

Structure and specialization of mycorrhizal networks in phylogenetically diverse tropical communities
Benoît, Perez‑Lamarque, Rémi, Petrolli, Christine, Strullu‑Derrien, Dominique, Strasberg, Hélène, Morlon, Marc‑André, Selosse, Florent, Martos
BioRxiv.

Estimating clade-specific diversification rates and palaeodiversity dynamics from reconstructed phylogenies
Nathan, Mazet, Hélène, Morlon, Pierre‑Henri, Fabre, Fabien L., Condamine
BioRxiv.

Neurotransmitter content heterogeneity within an interneuron class shapes inhibitory transmission at a central synapse
Dimitri, Dumontier, Caroline, Mailhes‑Hamon, Stéphane, Supplisson, Stéphane, Dieudonné
BioRxiv.

Displacement and dissociation of oligonucleotides during DNA hairpin closure under strain
Fangyuan, Ding, Simona, Cocco, Saurabh, Raj, Maria, Manosas, Michelle M., Spiering, David, Bensimon, Jean‑François, Allemand, Vincent, Croquette
BioRxiv.

Evolution is not uniform along protein sequences
Raphaël, Bricout, Dominique, Weil, David, Stroebel, Auguste, Genovesio, Hugues Roest, Crollius
BioRxiv.

Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks
J, Voznica, A, Zhukova, V, Boskova, E, Saulnier, F, Lemoine, M, Moslonka‑Lefebvre, O, Gascuel
BioRxiv.

Interpreting the pervasive observation of U-shaped Site Frequency Spectra
Fabian, Freund, Elise, Kerdoncuff, Sebastian, Matuszewski, Marguerite, Lapierre, Marcel, Hildebrandt, Jeffrey D., Jensen, Luca, Ferretti, Amaury, Lambert, Timothy B., Sackton, Guillaume, Achaz
BioRxiv.

Global drivers of obligate mycorrhizal symbionts diversification
Benoît, Perez‑Lamarque, Maarja, Öpik, Odile, Maliet, Ana C., Afonso Silva, Marc‑André, Selosse, Florent, Martos, Hélène, Morlon
BioRxiv.

Binding of different substrate molecules at the docking site and the active site of γ-secretase can trigger toxic events in sporadic and familial Alzheimer’s disease
Željko M., Svedružić, Vesna Šendula, Jengić, Lucija, Ostojić
BioRxiv.

Epistasis between synonymous and nonsynonymous mutations in Dictyostelium discoideum ammonium transporter amtA drives functional complementation in Saccharomyces cerevisiae
Asha, Densi, Revathi S, Iyer, Paike Jayadeva, Bhat
BioRxiv.

Elp1 is required for development of visceral sensory peripheral and central circuitry
Zariah, Tolman, Marta, Chaverra, Lynn, George, Frances, Lefcort
BioRxiv.

A maximum mean discrepancy approach reveals subtle changes in α-synuclein dynamics
Hippolyte, Verdier, François, Laurent, Alhassan, Cassé, Christian L., Vestergaard, Christian G., Specht, Jean‑Baptiste, Masson
BioRxiv.

Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes
Alex J., Veglia, Kalia S.I., Bistolas, Christian R., Voolstra, Benjamin C. C., Hume, Serge, Planes, Denis, Allemand, Emilie, Boissin, Patrick, Wincker, Julie, Poulain, Clémentine, Moulin, Guillaume, Bourdin, Guillaume, Iwankow, Sarah, Romac, Sylvain, Agostini, Bernard, Banaigs, Emmanuel, Boss, Chris, Bowler, Colomban, de Vargas, Eric, Douville, Michel, Flores, Didier, Forcioli, Paola, Furla, Pierre, Galand, Eric, Gilson, Fabien, Lombard, Stéphane, Pesant, Stéphanie, Reynaud, Shinichi, Sunagawa, Olivier, Thomas, Romain, Troublé, Didier, Zoccola, Adrienne M.S., Correa, Rebecca L., Vega Thurber
BioRxiv.

Population bottleneck has only marginal effect on fitness evolution and its repeatability in dioecious C. elegans
Karen, Bisschop, Thomas, Blankers, Janine, Mariën, Meike T., Wortel, Martijn, Egas, Astrid T., Groot, Marcel E., Visser, Jacintha, Ellers
BioRxiv.

Genome structures resolve the early diversification of teleost fishes
Elise, Parey, Alexandra, Louis, Jerome, Montfort, Olivier, Bouchez, Céline, Roques, Carole, Iampietro, Jerome, Lluch, Adrien, Castinel, Cécile, Donnadieu, Thomas, Desvignes, Christabel Floi, Bucao, Elodie, Jouanno, Ming, Wen, Sahar, Mejri, Ron, Dirks, Hans, Jansen, Christiaan, Henkel, Wei‑Jen, Chen, Margot, Zahm, Cédric, Cabau, Christophe, Klopp, Andrew W., Thompson, Marc, Robinson‑Rechavi, Ingo, Braasch, Guillaume, Lecointre, Julien, Bobe, John H., Postlethwait, Camille, Berthelot, Hugues Roest, Crollius, Yann, Guiguen
BioRxiv.

A descending interneuron with depolarized resting membrane potential controls C. elegans motor states
Jun, Meng, Tosif, Ahamed, Bin, Yu, Wesley, Hung, Sonia, El Mouridi, Alice, Leclercq‑Blondel, Marie, Gendrel, Zezhen, Wang, Lili, Chen, Quan, Wen, Thomas, Boulin, Shangbang, Gao, Mei, Zhen
BioRxiv.

Illuminating the plant transposon insertion landscape in real time using Cas9-targeted Nanopore sequencing and a novel pipeline
Ilya, Kirov, Pavel, Merkulov, Sofya, Gvaramiya, Roman, Komakhin, Murad, Omarov, Maxim, Dudnikov, Alina, Kocheshkova, Zakhar, Konstantinov, Alexander, Soloviev, Gennady, Karlov, Mikhail, Divashuk
BioRxiv.

Transcriptional profiling from whole embryos to single neuroblast lineages in Drosophila
Austin, Seroka, Sen‑Lin, Lai, Chris Q, Doe
BioRxiv.

Microglial TNFα orchestrates brain phosphorylation during the sleep period and controls homeostatic sleep
Maria J, Pinto, Léa, Cottin, Florent, Dingli, Victor, Laigle, Luís F., Ribeiro, Antoine, Triller, Fiona J, Henderson, Damarys, Loew, Véronique, Fabre, Alain, Bessis
BioRxiv.

Comparative analysis of genome-wide protein-DNA interactions across domains of life reveals unique binding patterns for hypersaline archaeal histones
Saaz, Sakrikar, Rylee K., Hackley, Mar, Martinez‑Pastor, Cynthia L., Darnell, Angie, Vreugdenhil, Amy K., Schmid
BioRxiv.

RSC and GRFs confer promoter directionality by limiting divergent noncoding transcription
Andrew C.K., Wu, Claudia, Vivori, Harshil, Patel, Theodora, Sideri, Fabien, Moretto, Folkert J., van Werven
BioRxiv.

Selective Control of Parasitic Nematodes Using Bioactivated Nematicides
Andrew R., Burns, Rachel J., Ross, Megan, Kitner, Jonathan R., Volpatti, Aditya S., Vaidya, Emily, Puumala, Bruna M., Palmeira, Elizabeth M., Redman, Jamie, Snider, Sagar, Marwah, Sai W., Chung, Margaret H., MacDonald, Jens, Tiefenbach, Chun, Hu, Qi, Xiao, Constance A. M., Finney, Henry M., Krause, Sonya A., MacParland, Igor, Stagljar, John S., Gilleard, Leah E., Cowen, Susan L. F., Meyer, Sean R., Cutler, James J., Dowling, Mark, Lautens, Inga, Zasada, Peter J., Roy
BioRxiv.

Deletion of can1/cat1 genes and expression of a dominant any1 mutation establish an effective canavanine selection in fission yeast
Anissia Ait, Saada, Alex B., Costa, Kirill S., Lobachev
BioRxiv.

Human cells contain myriad excised linear intron RNAs with links to gene regulation and potential utility as biomarkers
Jun, Yao, Shelby, Winans, Hengyi, Xu, Douglas C., Wu, Elizabeth A., Ferrick‑Kiddie, Manuel, Ares, Alan M., Lambowitz
BioRxiv.

Distinct functions of three chromatin remodelers in activator binding and preinitiation complex assembly
Yashpal, Rawal, Hongfang, Qiu, Alan G., Hinnebusch
BioRxiv.

Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration
Phong Quoc, Nguyen, Sonia, Huecas, Amna, Asif‑Laidin, Adrián, Plaza‑Pegueroles, Noé, Palmic, Joël, Acker, Juan, Reguera, Pascale, Lesage, Carlos, Fernández‑Tornero
BioRxiv.

Alterations of the axon initial segment in multiple sclerosis
Aysegul Dilsizoglu, Senol, Giulia, Pinto, Maxime, Beau, Vincent, Guillemot, Jeff L., Dupree, Christine, Stadelmann, Jonas, Ranft, Catherine, Lubetzki, Marc, Davenne
BioRxiv.

The Digital 3D-Atlas MAKER (DAMAKER) : a dynamic and expandable digital 3D-tool for monitoring the temporal changes in tissue growth during hindbrain morphogenesis
Matthias, Blanc, Frederic, Udina, Cristina, Pujades
BioRxiv.

Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly-dT termination signals
Mathias, Girbig, Juanjuan, Xie, Helga, Grötsch, Domenico, Libri, Odil, Porrua, Christoph W., Müller
BioRxiv.

Increased vulnerability of Purkinje cells in the posterior cerebellum of SCA1 mice is associated with molecular and cellular alterations related to disease pathology
Katherine, Hamel, Carrie, Sheeler, Juao‑Guilherme, Rosa, Stephen, Gilliat, Ying, Zhang, Marija, Cvetanovic
BioRxiv.

Evolutionary conservation of centriole rotational asymmetry in the human centrosome
Noémie, Gaudin, Paula Martin, Gil, Meriem, Boumendjel, Dmitry, Ershov, Catherine, Pioche‑Durieu, Manon, Bouix, Quentin, Delobelle, Lucia, Maniscalco, Thanh Bich, Ngan Phan, Vincent, Heyer, Bernardo, Reina‑San‑Martin, Juliette, Azimzadeh
BioRxiv.

Microglial TNFα controls GABAAR plasticity, slow waves and memory consolidation during sleep
Maria Joana, Pinto, Lucy, Bizien, Julie M.J., Fabre, Nina, Ðukanović, Valentin, Lepetz, Fiona, Henderson, Marine, Pujol, Romain W., Sala, Thibault, Tarpin, Daniela, Popa, Antoine, Triller, Clément, Léna, Véronique, Fabre, Alain, Bessis
BioRxiv.

Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom
Matthieu, Muffato, Alexandra, Louis, Nga Thi Thuy, Nguyen, Joseph, Lucas, Camille, Berthelot, Hugues Roest, Crollius
BioRxiv.

Automatic post-processing and merging of multiple spike-sorting analyses with Lussac
Victor, Llobet, Aurélien, Wyngaard, Boris, Barbour
BioRxiv.

Effects of cryo-EM cooling on structural ensembles
Lars V., Bock, Helmut, Grubmüller
BioRxiv.

Deep sequencing of yeast and mouse tRNAs and tRNA fragments using OTTR
H. Tobias, Gustafsson, Carolina, Galan, Tianxiong, Yu, Heather E., Upton, Lucas, Ferguson, Ebru, Kaymak, Zhiping, Weng, Kathleen, Collins, Oliver J., Rando
BioRxiv.

Emergence of time persistence in an interpretable data-driven neural network model
Sebastien, Wolf, Guillaume Le, Goc, Simona, Cocco, Georges, Debrégeas, Rémi, Monasson
BioRxiv.

Multivalent interactions essential for lentiviral integrase function
Allison, Ballandras‑Colas, Vidya, Chivukula, Dominika T., Gruszka, Zelin, Shan, Parmit K., Singh, Valerie E., Pye, Rebecca K., McLean, Gregory J., Bedwell, Wen, Li, Andrea, Nans, Nicola J., Cook, Hind J., Fadel, Eric M., Poeschla, David J., Griffiths, Javier, Vargas, Ian A., Taylor, Dmitry, Lyumkis, Hasan, Yardimci, Alan N., Engelman, Peter, Cherepanov
BioRxiv.

An epigenome atlas of neural progenitors within the embryonic mouse forebrain
Christopher T., Rhodes, Joyce J., Thompson, Apratim, Mitra, Dhanya, Asokumar, Dongjin R., Lee, Daniel J., Lee, Yajun, Zhang, Eva, Jason, Ryan K., Dale, Pedro P., Rocha, Timothy J., Petros
BioRxiv.

Genome-wide analysis of small RNA biogenesis proteins refine the evolution of Dicer-like and Argonaute gene families in flowering plants
Sébastien, Bélanger, Junpeng, Zhan, Blake C., Meyers
BioRxiv.

A key role for p60-Katanin in axon navigation is conditioned by the tubulin polyglutamylase TTLL6
Daniel, Ten Martin, Nicolas, Jardin, François, Giudicelli, Laïla, Gasmi, Juliette, Vougny, Cécile, Haumaître, Xavier, Nicol, Carsten, Janke, Coralie, Fassier, Jamilé, Hazan
BioRxiv.

High abundance of transcription regulators compacts the nucleoid in Escherichia coli
Cihan, Yilmaz, Karin, Schnetz
BioRxiv.

H3K36 methylation and DNA-binding both promote Ioc4 recruitment and Isw1b remodeller function
Jian, Li, Lena, Bergmann, Andreia Rafael, de Almeida, Kimberly M., Webb, Madelaine M., Gogol, Philipp, Voigt, Yingfang, Liu, Huanhuan, Liang, Michaela M., Smolle
BioRxiv.

Strand-switching mechanism of Pif1 helicase induced by its collision with a G-quadruplex embedded in dsDNA
Jessica, Valle‑Orero, Martin, Rieu, Phong Lan Thao, Tran, Alexandra, Joubert, Jean‑François, Allemand, Vincent, Croquette, Jean‑Baptiste, Boulé
BioRxiv.

Single-molecule mapping of replisome progression
Clémence, Claussin, Jacob, Vazquez, Iestyn, Whitehouse
BioRxiv.

Dissecting conformational rearrangements and allosteric modulation in metabotropic glutamate receptor activation
Nathalie, Lecat‑Guillet, Robert B., Quast, Hongkang, Liu, Thor C., Møller, Xavier, Rovira, Stéphanie, Soldevila, Laurent, Lamarque, Eric, Trinquet, Jianfeng, Liu, Jean‑Philippe, Pin, Philippe, Rondard, Emmanuel, Margeat
BioRxiv.

ZC3HC1 is a structural element of the nuclear basket effecting interlinkage of TPR polypeptides
Philip, Gunkel, Volker C., Cordes
BioRxiv.

High affinity enhancer-promoter interactions can bypass CTCF/cohesin-mediated insulation and contribute to phenotypic robustness
Shreeta, Chakraborty, Nina, Kopitchinski, Ariel, Eraso, Parirokh, Awasthi, Raj, Chari, Pedro P, Rocha
BioRxiv.

Properties and proximity proteomics of synaptopodin provide insight into the molecular organization of the spine apparatus of dendritic spines
Hanieh, Falahati, Yumei, Wu, Vanessa, Feuerer, Pietro, De Camilli
BioRxiv.

Single amino-acid mutation in a Drosophila melanogaster ribosomal protein : an insight in uL11 transcriptional activity
Héloïse, Grunchec, Jérôme, Deraze, Delphine, Dardalhon‑Cuménal, Valérie, Ribeiro, Anne, Coléno‑Costes, Karine, Dias, Sébastien, Bloyer, Emmanuèle, Mouchel‑Vielh, Frédérique, Peronnet, Hélène, Thomassin
BioRxiv.

Macroevolutionary dynamics of climatic niche space
Ignacio, Quintero, Marc A., Suchard, Walter, Jetz
BioRxiv.

Developing an empirical model for spillover and emergence : Orsay virus host range in Caenorhabditis
Clara L., Shaw, David A., Kennedy
BioRxiv.

Transcriptomic heterogeneity of Sox2-expressing pituitary cells
Patrick A., Fletcher, Rafael M., Prévide, Kosara, Smiljanic, Arthur, Sherman, Steven L., Coon, Stanko S., Stojilkovic
BioRxiv.

Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary
Yulong, Liu, Michelle E., Kossack, Matthew E., McFaul, Lana, Christensen, Stefan, Siebert, Sydney R., Wyatt, Caramai, Kamei, Samuel, Horst, Nayeli, Arroyo, Iain, Drummond, Celina E., Juliano, Bruce W., Draper
BioRxiv.

An interplay between cellular growth and atypical fusion defines morphogenesis of a modular glial niche
Maria Alexandra, Rujano, David, Briand, Bojana, Ðelić, Pauline, Spéder
BioRxiv.

A fully automated FAIMS-DIA proteomic pipeline for high-throughput characterization of iPSC-derived neurons
Luke, Reilly, Lirong, Peng, Erika, Lara, Daniel, Ramos, Michael, Fernandopulle, Caroline B., Pantazis, Julia, Stadler, Marianita, Santiana, Anant, Dadu, James, Iben, Faraz, Faghri, Mike A., Nalls, Steven L., Coon, Priyanka, Narayan, Andrew B., Singleton, Mark R., Cookson, Michael E., Ward, Yue A., Qi
BioRxiv.

An efficient and adaptable workflow for editing disease-relevant single nucleotide variants using CRISPR/Cas9
Inga, Usher, Lorena, Ligammari, Sara, Ahrabi, Emily, Hepburn, Calum, Connolly, Gareth L., Bond, Adrienne M., Flanagan, Lucia, Cottone
BioRxiv.

Chromosome scale assembly of allopolyploid genome of the diatom Fistulifera solaris
Yoshiaki, Maeda, Kahori, Watanabe, Ryosuke, Kobayashi, Tomoko, Yoshino, Chris, Bowler, Mitsufumi, Matsumoto, Tsuyoshi, Tanaka
BioRxiv.

Maf1, a repressor of RNA polymerase III-dependent transcription, regulates bone mass
Ellen, Busschers, Naseer, Ahmad, Li, Sun, James, Iben, Christopher J., Walkey, Aleksandra, Rusin, Tony, Yuen, Clifford J., Rosen, Ian M., Willis, Mone, Zaidi, Deborah L., Johnson
BioRxiv.

SPtsAnalysis : a high-throughput super-resolution single particle trajectory analysis to reconstruct organelle dynamics and membrane re-organization
P., Parutto, J., Heck, M., Lu, C., Kaminski, M., Heine, E., Avezov, D., Holcman
BioRxiv.

Dynamic Cell Imaging : application to the diatom Phaeodactylum tricornutum under environmental stresses
Houda, Bey, Florent, Charton, Helena Cruz, de Carvalho, Shun, Liu, Richard G., Dorrell, Chris, Bowler, Claude, Boccara, Martine, Boccara
BioRxiv.

Systematic expression profiling of dprs and DIPs reveals cell surface codes in Drosophila larval peripheral neurons
Yupu, Wang, Meike, Lobb‑Rabe, James, Ashley, Purujit, Chatterjee, Veera, Anand, Hugo J., Bellen, Oguz, Kanca, Robert A., Carrillo
BioRxiv.

The accumulation of lncRNAs in hybrid with DNA in patients with psoriasis reveals a decrease in the levels of RNase HII transcripts in the skin
Ecmel, Mehmetbeyoglu, Leila, Kianmehr, Murat, Borlu, Zeynep, Yilmaz, Seyma Basar, Kılıc, Hassan, Rajabi‑Maham, Serpil, Taheri, Minoo, Rassoulzadegan
BioRxiv.

Eoulsan 2 : an efficient workflow manager for reproducible bulk, long-read and single-cell transcriptomics analyses
Nathalie, Lehmann, Sandrine, Perrin, Claire, Wallon, Xavier, Bauquet, Vivien, Deshaies, Cyril, Firmo, Runxin, Du, Charlotte, Berthelier, Céline, Hernandez, Cédric, Michaud, Denis, Thieffry, Stéphane, Le Crom, Morgane, Thomas‑Chollier, Laurent, Jourdren
BioRxiv.

Heterogeneity and developmental dynamics of LYVE-1 perivascular macrophages distribution in the mouse brain
Marie, Karam, Guy, Malkinson, Isabelle, Brunet
BioRxiv.

A holobiont view of island biogeography : unraveling patterns driving the nascent diversification of a Hawaiian spider and its microbial associates
Ellie E., Armstrong, Benoît, Perez‑Lamarque, Ke, Bi, Cerise, Chen, Leontine E., Becking, Jun Ying, Lim, Tyler, Linderoth, Henrik, Krehenwinkel, Rosemary, Gillespie
BioRxiv.

Blind cavefish retain functional connectivity in the tectum despite loss of retinal input
Evan, Lloyd, Brittnee, McDole, Martin, Privat, James B., Jaggard, Erik, Duboué, German, Sumbre, Alex, Keene
BioRxiv.

DAVI : a tool for clustering and visualising protein domain architectures
Paul, Saighi, Chadi, Jaouadi, Fabio R.J, Vieira, Juliana Silva, Bernardes
BioRxiv.

Cerebellar stimulations prevent Levodopa-induced dyskinesia in mice and normalize brain activity
Bérénice, Coutant, Jimena Laura, Frontera, Elodie, Perrin, Adèle, Combes, Thibault, Tarpin, Fabien, Menardy, Caroline, Mailhes‑Hamon, Sylvie, Perez, Bertrand, Degos, Laurent, Venance, Clément, Léna, Daniela, Popa
BioRxiv.

Activity-dependent modulation of NMDA receptors by endogenous zinc shapes dendritic function in cortical neurons
Annunziato, Morabito, Yann, Zerlaut, Benjamin, Serraz, Romain, Sala, Pierre, Paoletti, Nelson, Rebola
BioRxiv.

A robust approach to estimate relative phytoplankton cell abundance from metagenomes
Juan José Pierella, Karlusich, Eric, Pelletier, Lucie, Zinger, Fabien, Lombard, Adriana, Zingone, Sébastien, Colin, Josep M., Gasol, Richard G., Dorrell, Eleonora, Scalco, Silvia G., Acinas, Patrick, Wincker, Colomban, de Vargas, Chris, Bowler
BioRxiv.

Environmental and molecular modulation of motor individuality in larval zebrafish
John, Hageter, Matthew, Waalkes, Jacob, Starkey, Haylee, Copeland, Heather, Price, Logan, Bays, Casey, Showman, Sean, Laverty, Sadie A., Bergeron, Eric J., Horstick
BioRxiv.

Identification of a stereotypic molecular arrangement of endogenous glycine receptors at spinal cord synapses
Stephanie A, Maynard, Philippe, Rostaing, Natascha, Schaefer, Olivier, Gemin, Adrien, Candat, Andréa, Dumoulin, Carmen, Villmann, Antoine, Triller, Christian G, Specht
BioRxiv.

Biochemical characterization of a human septin octamer
Martin, Fischer, Dominik, Frank, Reinhild, Rösler, Nils, Johnsson, Thomas, Gronemeyer
BioRxiv.

Fast wavefront shaping for two-photon brain imaging with large field of view correction
Baptiste, Blochet, Walther, Akemann, Sylvain, Gigan, Laurent, Bourdieu
BioRxiv.

Autonomic and respiratory components of orienting behaviors are mediated by descending pathways originating from the superior colliculus
Erin, Lynch, Bowen, Dempsey, Christine, Saleeba, Eloise, Monteiro, Anita, Turner, Peter GR, Burke, Andrew M, Allen, Roger AL, Dampney, Cara M, Hildreth, Jennifer L, Cornish, Ann K, Goodchild, Simon, McMullan
BioRxiv.

Control of protein synthesis and memory by GluN3A-NMDA receptors through inhibition of GIT1/mTORC1 assembly
María J., Conde‑Dusman, Partha N., Dey, Oscar, Elía‑Zudaire, Luis G., Rabaneda, Carmen, García‑Lira, Teddy, Grand, Victor, Briz, Eric R., Velasco, Raúl, Andero, Sergio, Niñerola, Angel, Barco, Pierre, Paoletti, John F., Wesseling, Fabrizio, Gardoni, Steven J., Tavalin, Isabel, Pérez‑Otaño
BioRxiv.

Nucleosome positioning on large tandem DNA repeats of the ‘601’ sequence engineered in Saccharomyces cerevisiae
Astrid, Lancrey, Alexandra, Joubert, Evelyne, Duvernois‑Berthet, Etienne, Routhier, Saurabh, Raj, Agnès, Thierry, Marta, Sigarteu, Loic, Ponger, Vincent, Croquette, Julien, Mozziconacci, Jean‑Baptiste, Boulé
BioRxiv.

Nuclear RNA binding regulates TDP-43 nuclear localization and passive nuclear export
Lauren, Duan, Benjamin L., Zaepfel, Vasilisa, Aksenova, Mary, Dasso, Jeffrey D., Rothstein, Petr, Kalab, Lindsey R., Hayes
BioRxiv.

Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related microalgae
Richard G., Dorrell, Alan, Kuo, Zoltan, Füssy, Elisabeth, Richardson, Asaf, Salamov, Nikola, Zarevski, Nastasia J., Freyria, Federico M., Ibarbalz, Jerry, Jenkins, Juan Jose Pierella, Karlusich, Andrei Stecca, Steindorff, Robyn E., Edgar, Lori, Handley, Kathleen, Lail, Anna, Lipzen, Vincent, Lombard, John, McFarlane, Charlotte, Nef, Anna M.G., Novák Vanclová, Yi, Peng, Chris, Plott, Marianne, Potvin, Fabio Rocha Jimenez, Vieira, Kerrie, Barry, Joel B., Dacks, Colomban, de Vargas, Bernard, Henrissat, Eric, Pelletier, Jeremy, Schmutz, Patrick, Wincker, Chris, Bowler, Igor V., Grigoriev, Connie, Lovejoy
BioRxiv.

Rapid redistribution and extensive binding of NANOG and GATA6 at shared regulatory elements underlie specification of divergent cell fates
Joyce J., Thompson, Daniel J., Lee, Apratim, Mitra, Sarah, Frail, Ryan, Dale, Pedro P., Rocha
BioRxiv.

Epigenetic Divergence during Early Stages of Speciation in an African Crater Lake Cichlid Fish
Grégoire, Vernaz, Alan G., Hudson, M., Emília Santos, Bettina, Fischer, Madeleine, Carruthers, Asilatu H., Shechonge, Nestory P., Gabagambi, Alexandra M., Tyers, Benjamin P., Ngatunga, Milan, Malinsky, Richard, Durbin, George F., Turner, Martin J., Genner, Eric A., Miska
BioRxiv.

Upregulation of breathing rate during running exercise by central locomotor circuits
Coralie, Hérent, Séverine, Diem, Gilles, Fortin, Julien, Bouvier
BioRxiv.

Contribution of genome scale metabolic modeling to niche theory
Antoine, Régimbeau, Marko, Budinich, Abdelhalim, Larhlimi, Juan Jose Pierella, Karlusich, Olivier, Aumont, Laurent, Memery, Chris, Bowler, Damien, Eveillard
BioRxiv.

A high-throughput assay for directly monitoring nucleolar rRNA biogenesis
Carson J., Bryant, Mason A., McCool, Laura, Abriola, Yulia V., Surovtseva, Susan J., Baserga
BioRxiv.

Human engineered skeletal muscle of hypaxial origin from pluripotent stem cells with advanced function and regenerative capacity
Mina, Shahriyari, Md Rezaul, Islam, M. Sadman, Sakib, Anastasia, Rika, Dennis, Krüger, Lalit, Kaurani, Harithaa, Anandakumar, Orr, Shomroni, Matthias, Schmidt, Gabriela, Salinas, Andreas, Unger, Wolfgang A., Linke, Jana, Zschüntzsch, Jens, Schmidt, André, Fischer, Wolfram‑Hubertus, Zimmermann, Malte, Tiburcy
BioRxiv.

Transcriptional heterogeneity of ventricular zone cells throughout the embryonic mouse forebrain
Dongjin R., Lee, Christopher T., Rhodes, Apratim, Mitra, Yajun, Zhang, Dragan, Maric, Ryan K., Dale, Timothy J., Petros
BioRxiv.

An executive center for the intake of liquids
Bowen, Dempsey, Selvee, Sungeelee, Philip, Bokiniec, Zoubida, Chettouh, Séverine, Diem, Sandra, Autran, Evan R., Harrell, James F.A., Poulet, Carmen, Birchmeier, Harry, Carrey, Auguste, Genovesio, Simon, McMullan, Christo, Goridis, Gilles, Fortin, Jean‑François, Brunet
BioRxiv.

A unique cerebellar pattern of microglia activation in a mouse model of encephalopathy of prematurity
Luisa, Klein, Juliette, Van Steenwinckel, Bobbi, Fleiss, Till, Scheuer, Christoph, Bührer, Valerie, Faivre, Cindy, Bokobza, Sophie, Lemoine, Corinne, Blugeon, Leslie, Schwendimann, Zsolt, Csaba, Dulcie A., Vousden, Jason P., Lerch, Anthony C., Vernon, Pierre, Gressens, Thomas, Schmitz
BioRxiv.

Bidirectional cooperation between Ubtf1 and SL1 determines RNA Polymerase I promoter recognition in cell and is negatively affected in the UBTF-E210K neuroregression syndrome
Michel G., Tremblay, Dany S., Sibai, Melissa, Valère, Jean‑Clément, Mars, Frédéric, Lessard, Roderick T., Hori, Mohammad M., Khan, Victor Y., Stefanovsky, Mark S., Ledoux, Tom, Moss
BioRxiv.

C. elegans TFIIH subunit GTF-2H5/TTDA is a non-essential transcription factor indispensable for DNA repair
Karen L., Thijssen, Melanie, van der Woude, Carlota, Davó‑Martínez, Mariangela, Sabatella, Wim, Vermeulen, Hannes, Lans
BioRxiv.

A three-sodium-to-glycine stoichiometry shapes the structural relationships of ATB0,+ with GlyT2 and GlyT1 in the SLC6 family
Bastien, Le Guellec, France, Rousseau, Marion, Bied, Stéphane, Supplisson
BioRxiv.

NMDARs in Granule Cells contribute to parallel fiber - Purkinje cell synaptic plasticity and motor learning
Martijn, Schonewille, Allison E., Girasole, Philippe, Rostaing, Caroline, Mailhes‑Hamon, Annick, Ayon, Alexandra B., Nelson, Antoine, Triller, Mariano, Casado, Chris I., De Zeeuw, Guy, Bouvier
BioRxiv.

Peripheral neuropathy linked mRNA export factor GANP reshapes gene regulation in human motor neurons
Rosa, Woldegebriel, Jouni, Kvist, Matthew, White, Matilda, Sinkko, Satu, Hänninen, Markus T, Sainio, Rubén, Torregrosa‑Munumer, Sandra, Harjuhaahto, Nadine, Huber, Sanna‑Kaisa, Herukka, Annakaisa, Haapasalo, Olli, Carpen, Andrew, Bassett, Emil, Ylikallio, Jemeen, Sreedharan, Henna, Tyynismaa
BioRxiv.

In mice and humans, the brain’s blood vessels mature postnatally to acquire barrier and contractile properties
Leila, Slaoui, Alice, Gilbert, Laetitia, Federici, Armelle, Rancillac, Antoinette, Gelot, Maryline, Favier, Noémie, Robil, Gaëlle, Letort, Karine, Dias, Laurent, Jourdren, Philippe, Mailly, Sylvain, Auvity, Salvatore, Cisternino, Martine, Cohen‑Salmon, Anne‑Cécile, Boulay
BioRxiv.

Detecting the ecological footprint of selection
Juliette, Luiselli, Isaac, Overcast, Andrew, Rominger, Megan, Ruffley, Hélène, Morlon, James, Rosindell
BioRxiv.

Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes
Diamantis, Sellis, Frédéric, Guérin, Olivier, Arnaiz, Walker, Pett, Emmanuelle, Lerat, Nicole, Boggetto, Sascha, Krenek, Thomas, Berendonk, Arnaud, Couloux, Jean‑Marc, Aury, Karine, Labadie, Sophie, Malinsky, Simran, Bhullar, Eric, Meyer, Linda, Sperling, Laurent, Duret, Sandra, Duharcourt
BioRxiv.

A genome-wide knock-out screen for actors of epigenetic silencing reveals new regulators of germline genes and 2-cell like cell state
Nikhil, Gupta, Lounis, Yakhou, Julien Richard, Albert, Fumihito, Miura, Laure, Ferry, Olivier, Kirsh, Marthe, Laisné, Kosuke, Yamaguchi, Cécilia, Domrane, Frédéric, Bonhomme, Arpita, Sarkar, Marine, Delagrange, Bertrand, Ducos, Maxim V. C., Greenberg, Gael, Cristofari, Sebastian, Bultmann, Takashi, Ito, Pierre‑Antoine, Defossez
BioRxiv.

Classification of non-coding variants with high pathogenic impact
Lambert, Moyon, Camille, Berthelot, Alexandra, Louis, Nga Thi Thuy, Nguyen, Hugues Roest, Crollius
BioRxiv.

METTL8 is required for 3-methylcytosine modification in human mitochondrial tRNAs
Jenna M., Lentini, Rachel, Bargabos, Chen, Chen, Dragony, Fu
BioRxiv.

OTX2 homeoprotein functions in adult choroid plexus
Anabelle, Planques, Vanessa Oliveira, Moreira, David, Benacom, Clémence, Bernard, Laurent, Jourdren, Corinne, Blugeon, Florent, Dingli, Vanessa, Masson, Damarys, Loew, Alain, Prochiantz, Ariel A., Di Nardo
BioRxiv.

Heterogeneous pdgfrβ+ cells regulate coronary vessel development and revascularization during heart regeneration
Subir, Kapuria, Haipeng, Bai, Juancarlos, Fierros, Ying, Huang, Feiyang, Ma, Tyler, Yoshida, Antonio, Aguayo, Fatma, Kok, Katie M., Wiens, Joycelyn K., Yip, Megan L., McCain, Matteo, Pellegrini, Mikiko, Nagashima, Peter F., Hitchcock, Nathan D., Lawson, Michael MR, Harrison, Ching‑Ling, Lien
BioRxiv.

Urgent Brain Vascular Regeneration Occurs via Lymphatic Transdifferentiation
Jingying, Chen, Xiuhua, Li, Rui, Ni, Qi, Chen, Qifen, Yang, Jianbo, He, Lingfei, Luo
BioRxiv.

Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin
Jee Min, Kim, Pat, Visanpattanasin, Vivian, Jou, Sheng, Liu, Xiaona, Tang, Qinsi, Zheng, Kai Yu, Li, Jonathan, Snedeker, Luke D., Lavis, Timothée, Lionnet, Carl, Wu
BioRxiv.

Detection of precisely edited CRISPR/Cas9 alleles through co-introduced restriction-fragment length polymorphisms
Chon‑Hwa, Tsai‑Morris, Sydney, Hertafeld, Yvonne, Rosario, James, Iben, Eric, Chang, Ling, Yi, Steven L., Coon, Stephen G., Kaler, Ryan, Dale, Benjamin, Feldman
BioRxiv.

Ligands binding to the cellular prion protein induce its protective proteolytic release with therapeutic potential in neurodegenerative proteinopathies
Luise, Linsenmeier, Behnam, Mohammadi, Mohsin, Shafiq, Karl, Frontzek, Julia, Bär, Amulya N., Shrivastava, Markus, Damme, Alexander, Schwarz, Stefano, Da Vela, Tania, Massignan, Sebastian, Jung, Angela, Correia, Matthias, Schmitz, Berta, Puig, Simone, Hornemann, Inga, Zerr, Jörg, Tatzelt, Emiliano, Biasini, Paul, Saftig, Michaela, Schweizer, Dimitri, Svergun, Ladan, Amin, Federica, Mazzola, Luca, Varani, Simrika, Thapa, Sabine, Gilch, Hermann, Schätzl, David A., Harris, Antoine, Triller, Marina, Mikhaylova, Adriano, Aguzzi, Hermann C., Altmeppen, Markus, Glatzel
BioRxiv.

A complex CTCF binding code defines TAD boundary structure and function
Li‑Hsin, Chang, Sourav, Ghosh, Andrea, Papale, Mélanie, Miranda, Vincent, Piras, Jéril, Degrouard, Mallory, Poncelet, Nathan, Lecouvreur, Sébastien, Bloyer, Amélie, Leforestier, David, Holcman, Daan, Noordermeer
BioRxiv.

Novel anti-repression mechanism of H-NS proteins by a phage “early protein”
Fredj Ben, Bdira, Liang, Qin, Alexander N., Volkov, Andrew M., Lippa, Amanda M., Erkelens, Nicholas, Bowring, Aimee L., Boyle, Marcellus, Ubbink, Simon L., Dove, Remus T., Dame
BioRxiv.

longfin causes cis-ectopic expression of the kcnh2a ether-a-go-go K+ channel to autonomously prolong fin outgrowth
Scott, Stewart, Heather K., Le Bleu, Gabriel A., Yette, Astra L., Henner, Amy E., Robbins, Joshua A., Braunstein, Kryn, Stankunas
BioRxiv.

Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods
Juan José Pierella, Karlusich, Eric, Pelletier, Fabien, Lombard, Madeline, Carsique, Etienne, Dvorak, Sébastien, Colin, Marc, Picheral, Francisco M., Cornejo‑Castillo, Silvia G., Acinas, Rainer, Pepperkok, Eric, Karsenti, Colomban, de Vargas, Patrick, Wincker, Chris, Bowler, Rachel A, Foster
BioRxiv.

In vivo dissection of Rhoa function in vascular development using zebrafish
Laura M., Pillay, Joseph J., Yano, Andrew E., Davis, Matthew G., Butler, Keith A., Barnes, Vanessa L., Reyes, Daniel, Castranova, Aniket V., Gore, Matthew R., Swift, James R., Iben, Amber N., Stratman, Brant M., Weinstein
BioRxiv.

Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean
Tom O., Delmont, Juan José Pierella, Karlusich, Iva, Veseli, Jessika, Fuessel, A. Murat, Eren, Rachel A., Foster, Chris, Bowler, Patrick, Wincker, Eric, Pelletier
BioRxiv.

Uncharted biosynthetic potential of the ocean microbiome
Lucas, Paoli, Hans‑Joachim, Ruscheweyh, Clarissa C., Forneris, Satria, Kautsar, Quentin, Clayssen, Guillem, Salazar, Alessio, Milanese, Daniel, Gehrig, Martin, Larralde, Laura M., Carroll, Pablo, Sánchez, Ahmed A., Zayed, Dylan R., Cronin, Silvia G., Acinas, Peer, Bork, Chris, Bowler, Tom O., Delmont, Matthew B., Sullivan, Patrick, Wincker, Georg, Zeller, Serina L., Robinson, Jörn, Piel, Shinichi, Sunagawa
BioRxiv.

Optimal Transport improves cell-cell similarity inference in single-cell omics data
Geert‑Jan, Huizing, Gabriel, Peyré, Laura, Cantini
BioRxiv.

Natural genetic variation drives microbiome selection in the Caenorhabditis elegans gut
Fan, Zhang, Jessica L., Weckhorst, Adrien, Assié, Ciara, Hosea, Christopher A., Ayoub, Anastasia, Khodakova, Mario Loeza, Cabrera, Daniela, Vidal, Marie‑Anne, Félix, Buck S., Samuel
BioRxiv.

The PPR domain of mitochondrial RNA polymerase is a ribonuclease required for mtDNA replication
Yi, Liu, Zhe, Chen, Zong‑Heng, Wang, Katherine, Delaney, Juanjie, Tang, Mehdi, Pirooznia, Duck‑Yeon, Lee, Yuesheng, Li, Hong, Xu
BioRxiv.

Evidence of post-domestication hybridization and adaptive introgression in Western European grapevine varieties
S., Freitas, M.A., Gazda, M., Rebelo, A.J., Muñoz‑Pajares, C., Vila‑Viçosa, A., Muñoz‑Mérida, L.M., Gonçalves, D., Azevedo‑Silva, S., Afonso, I., Castro, P.H., Castro, M., Sottomayor, A., Beja‑Pereira, J., Tereso, N., Ferrand, E., Gonçalves, A., Martins, M., Carneiro, H., Azevedo
BioRxiv.

Life history tradeoffs, division of labor and evolutionary transitions in individuality
Guilhem, Doulcier, Katrin, Hammerschmidt, Pierrick, Bourrat
BioRxiv.

Sequence-unrelated long noncoding RNAs converged to modulate the activity of conserved epigenetic machineries across kingdoms
Camille, Fonouni‑Farde, Aurélie, Christ, Thomas, Blein, Juan Sebastián, Ramírez‑Prado, María Florencia, Legascue, David, Latrasse, Michaël, Moison, Leandro, Lucero, Lucía, Ferrero, Daniel, Gonzalez, Moussa, Benhamed, Leandro, Quadrana, Martin, Crespi, Federico, Ariel
BioRxiv.

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation
Hannah, Thomas, Lisa, Van den Broeck, Ryan, Spurney, Rosangela, Sozzani, Margaret, Frank
BioRxiv.

Insights into biotic and abiotic modulation of ocean mesopelagic communities
Janaina, Rigonato, Marko, Budinich, Alejandro A., Murillo, Manoela C., Brandão, Juan J. Pierella, Karlusich, Yawouvi Dodji, Soviadan, Ann C., Gregory, Hisashi, Endo, Florian, Kokoszka, Dean, Vik, Nicolas, Henry, Paul, Frémont, Karine, Labadie, Ahmed A., Zayed, Céline, Dimier, Marc, Picheral, Sarah, Searson, Julie, Poulain, Stefanie, Kandels, Stéphane, Pesant, Eric, Karsenti, Peer, Bork, Chris, Bowler, Samuel, Chaffron, Colomban, de Vargas, Damien, Eveillard, Marion, Gehlen, Daniele, Iudicone, Fabien, Lombard, Hiroyuki, Ogata, Lars, Stemmann, Matthew B., Sullivan, Shinichi, Sunagawa, Patrick, Wincker, Olivier, Jaillon
BioRxiv.

A novel reticular oscillator in the brainstem synchronizes neonatal crying with breathing
Xin Paul, Wei, Matthew, Collie, Bowen, Dempsey, Gilles, Fortin, Kevin, Yackle
BioRxiv.

Engineering of a fluorescent chemogenetic reporter with tunable color for advanced live-cell imaging
Hela, Benaissa, Karim, Ounoughi, Isabelle, Aujard, Evelyne, Fischer, Rosette, Goïame, Julie, Nguyen, Alison G., Tebo, Chenge, Li, Thomas Le, Saux, Lydia, Danglot, Nicolas, Pietrancosta, Xavier, Morin, Ludovic, Jullien, Arnaud, Gautier
BioRxiv.

The biogenesis and function of nucleosome arrays
Ashish Kumar, Singh, Tamás, Schauer, Lena, Pfaller, Tobias, Straub, Felix, Mueller‑Planitz
BioRxiv.

NMDAR-mediated transcriptional control of gene expression during the development of medial ganglionic eminence-derived interneurons
Vivek, Mahadevan, Apratim, Mitra, Yajun, Zhang, Xiaoqing, Yuan, Areg, Peltekian, Ramesh, Chittajallu, Caroline, Esnault, Dragan, Maric, Christopher, Rhodes, Kenneth A., Pelkey, Ryan, Dale, Timothy J., Petros, Chris J., McBain
BioRxiv.

Targeted knockdown of the PAF49 component of the PAF53/PAF49 heterodimer causes the degradation of PAF53
Rachel, McNamar, Katrina, Rothblum, Lawrence I., Rothblum
BioRxiv.

Organization of DNA replication origin firing in Xenopus egg extracts : the role of intra-S checkpoint
Diletta, Ciardo, Olivier, Haccard, Hemalatha, Narassimprakash, Jean‑Michel, Arbona, Olivier, Hyrien, Benjamin, Audit, Kathrin, Marheineke, Arach, Goldar
BioRxiv.

The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis
Ming, Zhou, Ceyda, Coruh, Guanghui, Xu, Clara, Bourbousse, Alice, Lambolez, Julie A., Law
BioRxiv.

Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis
Gianluca, Teano, Lorenzo, Concia, Léopold, Carron, Léa, Wolff, Kateřina, Adamusová, Miloslava, Fojtová, Michael, Bourge, Amira, Kramdi, Vincent, Colot, Ueli, Grossniklaus, Chris, Bowler, Célia, Baroux, Alessandra, Carbone, Aline V., Probst, Petra, Procházková Schrumpfová, Jiří, Fajkus, Simon, Amiard, Stefan, Grob, Clara, Bourbousse, Fredy, Barneche
BioRxiv.

A bacterial GW-effector directly targets Arabidopsis Argonaute 1 to suppress PAMP-triggered immunity and cause disease
Odon, Thiébeauld, Magali, Charvin, Meenu Singla, Rastogi, Fan, Yang, Dominique, Pontier, Cécile, Pouzet, Laure, Bapaume, Delase, Amesefe, Guangyong, Li, Laurent, Deslandes, Thierry, Lagrange, James R., Alfano, Lionel, Navarro
BioRxiv.

Function of the HYDROXYCINNAMOYL-CoA:SHIKIMATE HYDROXYCINNAMOYL TRANSFERASE is evolutionarily conserved in embryophytes
Lucie, Kriegshauser, Samuel, Knosp, Etienne, Grienenberger, Kanade, Tatsumi, Desirée D., Gütle, Iben, Sørensen, Laurence, Herrgott, Julie, Zumsteg, Jocelyn K.C., Rose, Ralf, Reski, Danièle, Werck‑Reichhart, Hugues, Renault
BioRxiv.

Folding and Persistence Time of Intramolecular G-Quadruplexes Transiently Embedded in a DNA duplex
Phong Lan, Thao Tran, Martin, Rieu, Samar, Hodeib, Alexandra, Joubert, Jimmy, Ouellet, Patrizia, Alberti, Anthony, Bugaut, Jean‑François, Allemand, Jean‑Baptiste, Boulé, Vincent, Croquette
BioRxiv.

Spatio-Temporal Coordination of Transcription Preinitiation Complex Assembly in Live Cells
Vu Q., Nguyen, Anand, Ranjan, Sheng, Liu, Xiaona, Tang, Yick Hin, Ling, Jan, Wisniewski, Gaku, Mizuguchi, Kai Yu, Li, Vivian, Jou, Qinsi, Zheng, Luke D., Lavis, Timothée, Lionnet, Carl, Wu
BioRxiv.

Bioinformatics Analysis of Key Genes and Pathways for Obesity Associated Type 2 Diabetes Mellitus as a Therapeutic Target
Basavaraj, Vastrad, Anandkumar, Tengli, Chanabasayya, Vastrad, Iranna, Kotturshetti
BioRxiv.

Global drivers of eukaryotic plankton biogeography in the sunlit ocean
Sommeria‑Klein, Guilhem, Watteaux, Romain, Iudicone, Daniele, Bowler, Chris, Morlon, Hélène
BioRxiv.

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Daniel J., Richter, Romain, Watteaux, Thomas, Vannier, Jade, Leconte, Paul, Frémont, Gabriel, Reygondeau, Nicolas, Maillet, Nicolas, Henry, Gaëtan, Benoit, Ophélie Da, Silva, Tom O., Delmont, Antonio, Fernàndez‑Guerra, Samir, Suweis, Romain, Narci, Cédric, Berney, Damien, Eveillard, Frederick, Gavory, Lionel, Guidi, Karine, Labadie, Eric, Mahieu, Julie, Poulain, Sarah, Romac, Simon, Roux, Céline, Dimier, Stefanie, Kandels, Marc, Picheral, Sarah, Searson, Stéphane, Pesant, Jean‑Marc, Aury, Jennifer R., Brum, Claire, Lemaitre, Eric, Pelletier, Peer, Bork, Shinichi, Sunagawa, Fabien, Lombard, Lee, Karp‑Boss, Chris, Bowler, Matthew B., Sullivan, Eric, Karsenti, Mahendra, Mariadassou, Ian, Probert, Pierre, Peterlongo, Patrick, Wincker, Colomban, de Vargas, Maurizio Ribera, d’Alcalà, Daniele, Iudicone, Olivier, Jaillon
BioRxiv.

The RSC complex remodels nucleosomes in transcribed coding sequences and promotes transcription in Saccharomyces cerevisiae
Emily, Biernat, Jeena, Kinney, Kyle, Dunlap, Christian, Rizza, Chhabi K., Govind
BioRxiv.

SUSD4 controls GLUA2 degradation, synaptic plasticity and motor learning
I., González‑Calvo, K., Iyer, M., Carquin, A., Khayachi, F.A., Giuliani, J., Vincent, M., Séveno, S.M., Sigoillot, M., Veleanu, S., Tahraoui, M., Albert, O., Vigy, C., Bosso‑Lefèvre, Y., Nadjar, A., Dumoulin, A., Triller, J.‑L., Bessereau, L., Rondi‑Reig, P., Isope, F., Selimi
BioRxiv.

Nucleolar TFIIE plays a role in ribosomal biogenesis and performance
Tamara, Phan, Pallab, Maity, Christina, Ludwig, Lisa, Streit, Jens, Michaelis, Karin, Scharffetter‑Kochanek, Sebastian, Iben
BioRxiv.

Reciprocal stabilisation of glycine receptors and gephyrin scaffold proteins at inhibitory synapses
Thomas, Chapdelaine, Vincent, Hakim, Antoine, Triller, Jonas, Ranft, Christian G, Specht
BioRxiv.

Population genomics of the emerging forest pathogen Neonectria neomacrospora
Knud Nor, Nielsen, Shyam, Gopalakrishnan, Thorfinn Sand, Korneliussen, Mikkel, Skovrind, Kimmo, Sirén, Bent, Petersen, Thomas, Sicheritz‑Pontén, Iben M., Thomsen, M. Thomas P., Gilbert, Ole Kim, Hansen
BioRxiv.

Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum
Xue, Zhao, Achal, Rastogi, Anne Flore Deton, Cabanillas, Ouardia Ait, Mohamed, Catherine, Cantrel, Berangère, Lombard, Omer, Murik, Auguste, Genovesio, Chris, Bowler, Daniel, Bouyer, Damarys, Loew, Xin, Lin, Alaguraj, Veluchamy, Fabio Rocha Jimenez, Vieira, Leila, Tirichine
BioRxiv.

Chromatin stability generated by stochastic binding and unbinding of cross-linkers at looping sites revealed by Markov models
Andrea, Papale, David, Holcman
BioRxiv.

Single-cell transcriptomics of the early developing mouse cerebral cortex disentangles the spatial and temporal components of neuronal fate acquisition
Matthieu X., Moreau, Yoann, Saillour, Andrzej W., Cwetsch, Alessandra, Pierani, Frédéric, Causeret
BioRxiv.

Integration in or Near Oncogenes Plays Only a Minor Role in Determining the in Vivo Distribution of HIV Integration Sites Before or During Suppressive Antiretroviral Therapy
John M., Coffin, Michael J., Bale, Daria, Wells, Shuang, Guo, Brian, Luke, Jennifer M., Zerbato, Michele D., Sobolewskii, Twan, Sia, Wei, Shao, Xiaolin, Wu, Frank, Maldarelli, Mary F., Kearney, John W., Mellors, Stephen H., Hughes
BioRxiv.

Differential homeostatic regulation of glycinergic and GABAergic nanocolumns at mixed inhibitory synapses
Xiaojuan, Yang, Hervé, Le Corronc, Pascal, Legendre, Antoine, Triller, Christian G, Specht
BioRxiv.

Evaluating the reproducibility of single-cell gene regulatory network inference algorithms
Yoonjee, Kang, Denis, Thieffry, Laura, Cantini
BioRxiv.

Environmental vulnerability of the global ocean plankton community interactome
S., Chaffron, E., Delage, M., Budinich, D., Vintache, N., Henry, C., Nef, M., Ardyna, A.A., Zayed, P.C., Junger, P.E., Galand, C., Lovejoy, A., Murray, H., Sarmento, S., Acinas, M., Babin, D., Iudicone, O., Jaillon, E., Karsenti, P., Wincker, L., Karp‑Boss, M.B., Sullivan, C., Bowler, C., de Vargas, D., Eveillard
BioRxiv.

Glymphatic function in the gyrencephalic brain
Nicholas Burdon, Bèchet, Nagesh C., Shanbhag, Iben, Lundgaard
BioRxiv.

Mitotic interhomolog recombination drives genomic diversity in diatoms
Petra, Bulánková, Mirna, Sekulić, Denis, Jallet, Charlotte, Nef, Tom, Delmont, Cock, van Oosterhout, Ilse, Vercauteren, Cristina Maria, Osuna‑Cruz, Emmelien, Vancaester, Thomas, Mock, Koen, Sabbe, Fayza, Daboussi, Chris, Bowler, Wim, Vyverman, Klaas, Vandepoele, Lieven, De Veylder
BioRxiv.

Olfactory rod cells : a rare cell type in the larval zebrafish olfactory epithelium with an actin-rich apical projection
King Yee, Cheung, Suresh J., Jesuthasan, Sarah, Baxendale, Nicholas J., van Hateren, Mar, Marzo, Christopher J., Hill, Tanya T., Whitfield
BioRxiv.

Fast and accurate estimation of species-specific diversification rates using data augmentation
Odile, Maliet, Hélène, Morlon
BioRxiv.

Exon Junction Complex dependent mRNA localization is linked to centrosome organization during ciliogenesis
Oh Sung, Kwon, Rahul, Mishra, Adham, Safieddine, Emeline, Coleno, Quentin, Alasseur, Marion, Faucourt, Isabelle, Barbosa, Edouard, Bertrand, Nathalie, Spassky, Hervé Le, Hir
BioRxiv.

Large, stable spikes exhibit differential broadening in excitatory and inhibitory neocortical boutons
Andreas, Ritzau‑Jost, Timur, Tsintsadze, Martin, Krueger, Jonas, Ader, Ingo, Bechmann, Jens, Eilers, Boris, Barbour, Stephen M., Smith, Stefan, Hallermann
BioRxiv.

AIBP-CAV1-VEGFR3 axis dictates lymphatic cell fate and controls lymphangiogenesis
Xiaojie, Yang, Jun‑dae, Kim, Qilin, Gu, Qing, Yan, Jonathan, Astin, Philip S, Crosier, Pengchun, Yu, Stanley G, Rockson, Longhou, Fang
BioRxiv.

Morphologically constrained modeling of spinous inhibition in the somato-sensory cortex
Olivier, Gemin, Pablo, Serna, Nora, Assendorp, Matteo, Fossati, Philippe, Rostaing, Antoine, Triller, Cécile, Charrier
BioRxiv.

The yeast ISW1b ATP-dependent chromatin remodeler is critical for nucleosome spacing and dinucleosome resolution
Peter R., Eriksson, David J., Clark
BioRxiv.

Glucose-lactose mixture feeds in industry-like conditions : a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30
Aurélie, Pirayre, Laurent, Duval, Corinne, Blugeon, Cyril, Firmo, Sandrine, Perrin, Etienne, Jourdier, Antoine, Margeot, Frédérique, Bidard
BioRxiv.

The Arabidopsis active demethylase ROS1 cis-regulates immune-responsive genes by pruning DNA methylation at promoter-regulatory regions
Thierry, Halter, Jingyu, Wang, Delase, Amesefe, Emmanuelle, Lastrucci, Magali, Charvin, Meenu Singla, Rastogi, Lionel, Navarro
BioRxiv.

DET1-mediated COP1 regulation avoids HY5 activity over second-site targets to tune plant photomorphogenesis
Esther, Cañibano, Clara, Bourbousse, Marta, Garcia‑Leon, Lea, Wolff, Camila, Garcia‑Baudino, Fredy, Barneche, Vicente, Rubio, Sandra, Fonseca
BioRxiv.

Structural Analysis of Simultaneous Activation and Inhibition of γ-Secretase Activity in Development of Drugs for Alzheimer’s disease
Željko M., Svedružić, Katarina, Vrbnjak, Manuel, Martinović, Vedran, Miletić
BioRxiv.

Early Emergence and Long-Term Persistence of HIV-Infected T Cell Clones in Children
Michael J., Bale, Mary Grace, Katusiime, Daria, Wells, Xiaolin, Wu, Jonathan, Spindler, Elias K., Halvas, Joshua C., Cyktor, Ann, Wiegand, Wei, Shao, Mark F., Cotton, Stephen H., Hughes, John W., Mellors, John M., Coffin, Gert U., Van Zyl, Mary F., Kearney
BioRxiv.

New insights into homoeologous copy number variations in the hexaploid wheat genome
Caroline, Juery, Lorenzo, Concia, Romain, De Oliveira, Nathan, Papon, Ricardo, Ramírez‑González, Moussa, Benhamed, Cristobal, Uauy, Frédéric, Choulet, Etienne, Paux
BioRxiv.

A conserved choreography of mRNAs at centrosomes reveals a localization mechanism involving active polysome transport
Adham, Safieddine, Emeline, Coleno, Abdel‑Meneem, Traboulsi, Oh Sung, Kwon, Frederic, Lionneton, Virginie, Georget, Marie‑Cécile, Robert, Thierry, Gostan, Charles, Lecellier, Soha, Salloum, Racha, Chouaib, Xavier, Pichon, Hervé, Le Hir, Kazem, Zibara, Marion, Peter, Edouard, Bertrand
BioRxiv.

A stress-induced Tyrosine tRNA depletion response mediates codon-based translational repression and growth suppression
Doowon, Huh, Maria C., Passarelli, Jenny, Gao, Shahnoza N, Dusmatova, Clara, Goin, Lisa, Fish, Alexandra M., Pinzaru, Henrik, Molina, Elizabeth A., McMillan, Hosseinali, Asgharian, Hani, Goodarzi, Sohail F., Tavazoie
BioRxiv.

Alteration of the premature tRNA landscape by gammaherpesvirus infection
Jessica, Tucker, Aaron M., Schaller, Ian, Willis, Britt A., Glaunsinger
BioRxiv.

metabaR : an R package for the evaluation and improvement of DNA metabarcoding data quality
Lucie, Zinger, Clément, Lionnet, Anne‑Sophie, Benoiston, Julian, Donald, Céline, Mercier, Frédéric, Boyer
BioRxiv.

Reduced Gene Dosage of Histone H4 Prevents CENP-A Mislocalization in Saccharomyces cerevisiae
Jessica R., Eisenstatt, Kentaro, Ohkuni, Wei‑Chun, Au, Olivia, Preston, Evelyn, Suva, Michael, Costanzo, Charles, Boone, Munira A., Basrai
BioRxiv.

Dual contributions of cerebellar-thalamic networks to learning and offline consolidation of a complex motor task
Andres P, Varani, Romain W, Sala, Caroline, Mailhes‑Hamon, Jimena L, Frontera, Clément, Léna, Daniela, Popa
BioRxiv.

Factors influencing the accuracy in dating single gene trees
Guillaume, Louvel, Hugues Roest, Crollius
BioRxiv.

Emergence of Non-Canonical Parvalbumin-Containing Interneurons in Hippocampus of a Murine Model of Type I Lissencephaly
Tyler G., Ekins, Vivek, Mahadevan, Yajun, Zhang, James A., D’Amour, Timothy, Petros, Chris J., McBain
BioRxiv.

Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo
Swann, Floc’hlay, Maria Dolores, Molina, Céline, Hernandez, Emmanuel, Haillot, Morgane, Thomas‑Chollier, Thierry, Lepage, Denis, Thieffry
BioRxiv.

Computational verification of large logical models – application to the prediction of T cell response to checkpoint inhibitors
Céline, Hernandez, Morgane, Thomas‑Chollier, Aurélien, Naldi, Denis, Thieffry
BioRxiv.

Human ORC/MCM density is low in active genes and correlates with replication time but does not solely define replication initiation zones
Nina, Kirstein, Alexander, Buschle, Xia, Wu, Stefan, Krebs, Helmut, Blum, Wolfgang, Hammerschmidt, Laurent, Lacroix, Olivier, Hyrien, Benjamin, Audit, Aloys, Schepers
BioRxiv.

Identification and characterization of phlorizin transporter from Arabidopsis thaliana and its application for phlorizin production in Saccharomyces cerevisiae
Zeinu Mussa, Belew, Christoph, Crocoll, Iben, Møller‑Hansen, Michael, Naesby, Irina, Borodina, Hussam Hassan, Nour‑Eldin
BioRxiv.

Independent respiratory and locomotor rhythms in running mice
Coralie, Hérent, Séverine, Diem, Gilles, Fortin, Julien, Bouvier
BioRxiv.

Hyperprolactinemia in a male pituitary androgen receptor knockout mouse model is associated with a female-like pattern of lactotroph development
Laura, O’Hara, Helen C., Christian, Paul, Le Tissier, Lee B., Smith
BioRxiv.

Functional Predictors of Causative Cis-Regulatory Mutations in Mendelian Disease
Hemant, Bengani, Detelina, Grozeva, Lambert, Moyon, Shipra, Bhatia, Susana R, Louros, Jilly, Hope, Adam, Jackson, James G, Prendergast, Liusaidh J., Owen, Magali, Naville, Jacqueline, Rainger, Graeme, Grimes, Mihail, Halachev, Laura C, Murphy, Olivera, Spasic‑Boskovic, Veronica, van Heyningen, Peter, Kind, Catherine M, Abbott, Emily, Osterweil, F Lucy, Raymond, Hugues Roest, Crollius, David R, FitzPatrick
BioRxiv.

Developing methods for measuring national distributions and densities of wild mammals using camera traps : A Kosovo study
Sarah E., Beatham, Alastair I., Ward, David, Fouracre, Jeton, Muhaxhiri, Michael, Sallmann, Besim, Zogu, Valdet, Gjinovci, Anthony J., Wilsmore, Graham C., Smith
BioRxiv.

tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast
Joana F, Tavares, Nick K., Davis, Ana, Poim, Andreia, Reis, Stefanie, Kellner, Inês, Sousa, Ana R., Soares, Gabriela M R, Moura, Peter C, Dedon, Manuel A S, Santos
BioRxiv.

Pregnancy data enable identification of relevant biomarkers and a partial prognosis of autism at birth
Hugues, Caly, Hamed, Rabiei, Perrine, Coste‑Mazeau, Sebastien, Hantz, Sophie, Alain, Jean‑Luc, Eyraud, Thierry, Chianea, Catherine, Caly, David, Makowski, Nouchine, Hadjikhani, Eric, Lemonnier, Yehezkel, Ben‑Ari
BioRxiv.

Post-replicative pairing of sister ter regions in Escherichia coli involves multiple activities of MatP
Estelle, Crozat, Catherine, Tardin, Maya, Salhi, Philippe, Rousseau, Armand, Lablaine, Tommaso, Bertoni, David, Holcman, Bianca, Sclavi, Pietro, Cicuta, François, Cornet
BioRxiv.

NCBP3 is a productive mRNP component
Yuhui, Dou, Isabelle, Barbosa, Hua, Jiang, Claudia, Iasillo, Kelly R., Molloy, Wiebke Manuela, Schulze, Stephen, Cusack, Manfred, Schmid, Hervé, Le Hir, John, LaCava, Torben Heick, Jensen
BioRxiv.

Prior hypotheses or regularization allow inference of diversification histories from extant timetrees
Hélène, Morlon, Florian, Hartig, Stéphane, Robin
BioRxiv.

Functional characterization of Polr3a hypomyelinating leukodystrophy mutations in the S. cerevisiae homolog, RPC160
Robyn D., Moir, Christian, Lavados, JaeHoon, Lee, Ian M., Willis
BioRxiv.

Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states
Mathias, Girbig, Agata D., Misiaszek, Matthias K., Vorländer, Aleix, Lafita, Helga, Grötsch, Florence, Baudin, Alex, Bateman, Christoph W., Müller
BioRxiv.

A single nucleotide change underlies the genetic assimilation of a plastic trait
Paul, Vigne, Clotilde, Gimond, Céline, Ferrari, Anne, Vielle, Johan, Hallin, Ania, Pino‑Querido, Sonia El, Mouridi, Christian, Frøkjær‑Jensen, Thomas, Boulin, Henrique, Teotónio, Christian, Braendle
BioRxiv.

Ecogenomics of key prokaryotes in the arctic ocean
Marta, Royo‑Llonch, Pablo, Sánchez, Clara, Ruiz‑González, Guillem, Salazar, Carlos, Pedrós‑Alió, Karine, Labadie, Lucas, Paoli, Samuel, Chaffron, Damien, Eveillard, Eric, Karsenti, Shinichi, Sunagawa, Patrick, Wincker, Lee, Karp‑Boss, Chris, Bowler, Silvia G, Acinas
BioRxiv.

Synchronization, stochasticity and phase waves in neuronal networks with spatially-structured connectivity
Anirudh, Kulkarni, Jonas, Ranft, Vincent, Hakim
BioRxiv.

The impact of transposable elements on tomato diversity
Marisol, Domínguez, Elise, Dugas, Médine, Benchouaia, Basile, Leduque, José, Jimenez‑Gomez, Vincent, Colot, Leandro, Quadrana
BioRxiv.

Altering Polycomb Repressive Complex 2 activity partially suppresses ddm1 mutant phenotypes in Arabidopsis
Martin, Rougée, Leandro, Quadrana, Jérôme, Zervudacki, Vincent, Colot, Lionel, Navarro, Angélique, Deleris
BioRxiv.

The Genomic Loci of Specific Human tRNA Genes Exhibit Ageing-Related DNA Hypermethylation
Richard J., Acton, Wei, Yuan, Fei, Gao, Yudong, Xia, Emma, Bourne, Eva, Wozniak, Jordana, Bell, Karen, Lillycrop, Jun, Wang, Elaine, Dennison, Nicholas, Harvey, Charles A., Mein, Tim D., Spector, Pirro G., Hysi, Cyrus, Cooper, Christopher G., Bell
BioRxiv.

UPMaBoSS : a novel framework for dynamic cell population modeling
Gautier, Stoll, Aurélien, Naldi, Vincent, Noël, Eric, Viara, Emmanuel, Barillot, Guido, Kroemer, Denis, Thieffry, Laurence, Calzone
BioRxiv.

A minimally disruptive method for measuring water potential in-planta using hydrogel nanoreporters
Piyush, Jain, Weizhen, Liu, Siyu, Zhu, Jeff, Melkonian, Duke, Pauli, Susan Jean, Riha, Michael A., Gore, Abraham D., Stroock
BioRxiv.

Callose deposition is essential for the completion of cytokinesis in the unicellular alga, Penium margaritaceum
Destiny J., Davis, Minmin, Wang, Iben, Sørensen, Jocelyn K.C., Rose, David S., Domozych, Georgia, Drakakaki
BioRxiv.

Hypomodified tRNA in evolutionarily distant yeasts can trigger rapid tRNA decay to activate the general amino acid control response, but with different consequences
Thareendra, De Zoysa, Eric M., Phizicky
BioRxiv.

Fluorescent secreted bacterial effectors reveal active intravacuolar proliferation of Listeria monocytogenes in epithelial cells
Caroline, Peron‑Cane, José‑Carlos, Fernandez, Julien, Leblanc, Laure, Wingertsmann, Arnaud, Gautier, Nicolas, Desprat, Alice, Lebreton
BioRxiv.

One enzyme many faces : alkaline phosphatase-based phosphorus-nutrient strategies and the regulatory cascade revealed by CRISPR/Cas9 gene knockout
Kaidian, Zhang, Zhi, Zhou, Jierui, Wang, Jiashun, Li, Xin, Lin, Ling, Li, Xiaomei, Wu, Yanchun, You, Senjie, Lin
BioRxiv.

Altered Capicua expression drives regional Purkinje neuron vulnerability through ion channel gene dysregulation in Spinocerebellar ataxia type 1
Ravi, Chopra, David D, Bushart, John P, Cooper, Dhananjay, Yellajoshyula, Logan M, Morrison, Haoran, Huang, Daniel R, Scoles, Stefan M, Pulst, Harry T, Orr, Vikram G, Shakkottai
BioRxiv.

Cis acting variation is common, can propagates across multiple regulatory layers, but is often buffered in developmental programs
Swann, Floc’hlay, Emily, Wong, Bingqing, Zhao, Rebecca R., Viales, Morgane, Thomas‑Chollier, Denis, Thieffry, David A., Garfield, Eileen EM, Furlong
BioRxiv.

A localization screen reveals translation factories and widespread co-translational RNA targeting
Racha, Chouaib, Adham, Safieddine, Xavier, Pichon, Arthur, Imbert, Oh Sung, Kwon, Aubin, Samacoits, Abdel‑Meneem, Traboulsi, Marie‑Cécile, Robert, Nikolay, Tsanov, Emeline, Coleno, Ina, Poser, Christophe, Zimmer, Anthony, Hyman, Hervé Le, Hir, Kazem, Zibara, Marion, Peter, Florian, Mueller, Thomas, Walter, Edouard, Bertrand
BioRxiv.

OTTER, a new method quantifying absolute amounts of tRNAs
Akihisa, Nagai, Kohei, Mori, Yuma, Shiomi, Tohru, Yoshihisa
BioRxiv.

Evolutionary Changes in Left-Right Visceral Asymmetry in Astyanax Cavefish
Li, Ma, Mandy, Ng, Janet, Shi, Aniket V., Gore, Daniel, Castranova, Brant M., Weinstein, William R., Jeffery
BioRxiv.

Live Imaging of Intracranial Lymphatics in the Zebrafish
Daniel, Castranova, Bakary, Samasa, Marina Venero, Galanternik, Hyun Min, Jung, Van N., Pham, Brant M., Weinstein
BioRxiv.

Visualizing the dynamics of exported bacterial proteins with the chemogenetic fluorescent reporter FAST
Yankel, Chekli, Caroline, Peron‑Cane, Dario, Dell’Arciprete, Jean‑François, Allemand, Chenge, Li, Jean‑Marc, Ghigo, Arnaud, Gautier, Alice, Lebreton, Nicolas, Desprat, Christophe, Beloin
BioRxiv.

In-depth characterization of layer 5 output neurons of the primary somatosensory cortex innervating the mouse dorsal spinal cord
N., Frezel, E., Platonova, F.F., Voigt, J.M., Mateos, R., Kastli, U., Ziegler, T., Karayannis, F., Helmchen, H., Wildner, H.U., Zeilhofer
BioRxiv.

Allochronic Divergence Driven by Spatial Asynchrony in Precipitation in Neotropical Frogs ?
Carlos E., Guarnizo, Paola, Montoya, Ignacio, Quintero, Carlos Daniel, Cadena
BioRxiv.

Kingdom-wide analysis of the evolution of the plant type III polyketide synthase superfamily
Thomas, Naake, Hiroshi A., Maeda, Sebastian, Proost, Takayuki, Tohge, Alisdair R., Fernie
BioRxiv.

Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity
Guilhem, Doulcier, Amaury, Lambert, Silvia, De Monte, Paul B., Rainey
BioRxiv.

FORK-seq : replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Magali, Hennion, Jean‑Michel, Arbona, Laurent, Lacroix, Corinne, Cruaud, Bertrand, Theulot, Benoît Le, Tallec, Florence, Proux, Xia, Wu, Elizaveta, Novikova, Stefan, Engelen, Arnaud, Lemainque, Benjamin, Audit, Olivier, Hyrien
BioRxiv.

Testing the ‘caves as islands’ model in two cave-obligate invertebrates with a genomic approach
Andras, Balogh, Lam, Ngo, Kirk S., Zigler, Groves, Dixon
BioRxiv.

Genetic tool development in marine protists : Emerging model organisms for experimental cell biology
Drahomíra, Faktorová, R. Ellen R., Nisbet, José A. Fernández, Robledo, Elena, Casacuberta, Lisa, Sudek, Andrew E., Allen, Manuel, Ares, Cristina, Aresté, Cecilia, Balestreri, Adrian C., Barbrook, Patrick, Beardslee, Sara, Bender, David S., Booth, François‑Yves, Bouget, Chris, Bowler, Susana A., Breglia, Colin, Brownlee, Gertraud, Burger, Heriberto, Cerutti, Rachele, Cesaroni, Miguel A., Chiurillo, Thomas, Clemente, Duncan B., Coles, Jackie L., Collier, Elizabeth C., Cooney, Kathryn, Coyne, Roberto, Docampo, Christopher L., Dupont, Virginia, Edgcomb, Elin, Einarsson, Pía A., Elustondo, Fernan, Federici, Veronica, Freire‑Beneitez, Nastasia J., Freyria, Kodai, Fukuda, Paulo A., García, Peter R., Girguis, Fatma, Gomaa, Sebastian G., Gornik, Jian, Guo, Vladimír, Hampl, Yutaka, Hanawa, Esteban R., Haro‑Contreras, Elisabeth, Hehenberger, Andrea, Highfield, Yoshihisa, Hirakawa, Amanda, Hopes, Christopher J., Howe, Ian, Hu, Jorge, Ibañez, Nicholas A.T., Irwin, Yuu, Ishii, Natalia Ewa, Janowicz, Adam C., Jones, Ambar, Kachale, Konomi, Fujimura‑Kamada, Binnypreet, Kaur, Jonathan Z., Kaye, Eleanna, Kazana, Patrick J., Keeling, Nicole, King, Lawrence A., Klobutcher, Noelia, Lander, Imen, Lassadi, Zhuhong, Li, Senjie, Lin, Jean‑Claude, Lozano, Fulei, Luan, Shinichiro, Maruyama, Tamara, Matute, Cristina, Miceli, Jun, Minagawa, Mark, Moosburner, Sebastián R., Najle, Deepak, Nanjappa, Isabel C., Nimmo, Luke, Noble, Anna M.G. Novák, Vanclová, Mariusz, Nowacki, Isaac, Nuñez, Arnab, Pain, Angela, Piersanti, Sandra, Pucciarelli, Jan, Pyrih, Joshua S., Rest, Mariana, Rius, Deborah, Robertson, Albane, Ruaud, Iñaki, Ruiz‑Trillo, Monika A., Sigg, Pamela A., Silver, Claudio H., Slamovits, G. Jason, Smith, Brittany N., Sprecher, Rowena, Stern, Estienne C., Swart, Anastasios D., Tsaousis, Lev, Tsypin, Aaron, Turkewitz, Jernej, Turnšek, Matus, Valach, Valérie, Vergé, Peter, von Dassow, Tobias, von der Haar, Ross F., Waller, Lu, Wang, Xiaoxue, Wen, Glen, Wheeler, April, Woods, Huan, Zhang, Thomas, Mock, Alexandra Z., Worden, Julius, Lukeš
BioRxiv.

A far-red fluorescent chemogenetic reporter for in vivo molecular imaging
Chenge, Li, Alison G., Tebo, Marion, Thauvin, Marie‑Aude, Plamont, Michel, Volovitch, Xavier, Morin, Sophie, Vriz, Arnaud, Gautier
BioRxiv.

Detecting genetic variation and base modifications together in the same single molecules of DNA and RNA at base pair resolution using a magnetic tweezer platform
Zhen, Wang, Jérôme, Maluenda, Laurène, Giraut, Thibault, Vieille, Andréas, Lefevre, David, Salthouse, Gaël, Radou, Rémi, Moulinas, Sandra, Astete‑Morales, Pol, d’Avezac, Geoff, Smith, Charles, André, Jean‑François, Allemand, David, Bensimon, Vincent, Croquette, Jimmy, Ouellet, Gordon, Hamilton
BioRxiv.

Caenorhabditis elegans dauers vary recovery in response to bacteria from natural habitat
Louis T., Bubrig, John M., Sutton, Janna L., Fierst
BioRxiv.

Potential role of the X circular code in the regulation of gene expression
Julie D., Thompson, Raymond, Ripp, Claudine, Mayer, Olivier, Poch, Christian J., Michel
BioRxiv.

Ruler elements in chromatin remodelers set nucleosome array spacing and phasing
Elisa, Oberbeckmann, Vanessa, Niebauer, Shinya, Watanabe, Lucas, Farnung, Manuela, Moldt, Andrea, Schmid, Patrick, Cramer, Craig L., Peterson, Sebastian, Eustermann, Karl‑Peter, Hopfner, Philipp, Korber
BioRxiv.

Rerouting of ribosomal proteins into splicing in plant organelles
Chuande, Wang, Rachel, Fourdin, Martine, Quadrado, Céline, Dargel‑Graffin, Dimitri, Tolleter, David, Macherel, Hakim, Mireau
BioRxiv.

Repeated colonization of caves leads to phenotypic convergence in catfishes (Siluriformes : Trichomycterus) at a small geographical scale
Juan Sebastián, Flórez, Carlos Daniel, Cadena, Carlos, DoNascimiento, Mauricio, Torres
BioRxiv.

Conserved small nucleotidic elements at the origin of concerted piRNA biogenesis from genes and lncRNAs
Silke, Jensen, Emilie, Brasset, Elise, Parey, Hugues, Roest‑Crollius, Igor V., Sharakhov, Chantal, Vaury
BioRxiv.

Testing the adaptive value of sporulation in budding yeast using experimental evolution
Kelly M., Thomasson, Alexander, Franks, Henrique, Teotónio, Stephen R., Proulx
BioRxiv.

Bidirectional control of fear memories by the cerebellum through the ventrolateral periaqueductal grey
Jimena L., Frontera, Hind Baba, Aissa, Romain William, Sala, Caroline, Mailhes‑Hamon, Ioana Antoaneta, Georgescu, Clément, Léna, Daniela, Popa
BioRxiv.

Functional abnormalities in the cerebello-thalamic pathways in an animal model of dystonia
Elena Laura, Margarint, Hind Baba, Aïssa, Andrés Pablo, Varani, Romain, Sala, Fabien, Menardy, Assunta, Pelosi, Denis, Hervé, Clément, Léna, Daniela, Popa
BioRxiv.

Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications
Elise, Parey, Alexandra, Louis, Cédric, Cabau, Yann, Guiguen, Hugues Roest, Crollius, Camille, Berthelot
BioRxiv.

Low ribosomal RNA genes copy number provoke genomic instability and chromosomal segment duplication events that modify global gene expression and plant-pathogen response
Ariadna, Picart‑Picolo, Stefan, Grob, Nathalie, Picault, Michal, Franek, Thierry, halter, Tom R., Maier, Christel, Llauro, Edouard, Jobet, Panpan, Zhang, Paramasivan, Vijayapalani, Thomas J., Baum, Lionel, Navarro, Martina, Dvorackova, Marie, Mirouze, Frederic, Pontvianne
BioRxiv.

Local translation in perisynaptic astrocytic processes is specific and regulated by fear conditioning
Noémie, Mazaré, Marc, Oudart, Julien, Moulard, Giselle, Cheung, Romain, Tortuyaux, Philippe, Mailly, David, Mazaud, Alexis‑Pierre, Bemelmans, Anne‑Cécile, Boulay, Corinne, Blugeon, Laurent, Jourdren, Stéphane, Le Crom, Nathalie, Rouach, Martine, Cohen‑Salmon
BioRxiv.

Non-essential function of KRAB zinc finger gene clusters in retrotransposon suppression
Gernot, Wolf, Alberto, de Iaco, Ming‑An, Sun, Melania, Bruno, Matthew, Tinkham, Don, Hoang, Apratim, Mitra, Sherry, Ralls, Didier, Trono, Todd S., Macfarlan
BioRxiv.

Akt/Foxo pathway activation switches apoptosis to senescence in short telomere zebrafish
Mounir, El‑Maï, Marta, Marzullo, Inês Pimenta, de Castro, Miguel Godinho, Ferreira
BioRxiv.

Engineering E. coli for magnetic control and the spatial localization of functions
Mary, Aubry, Wei‑An, Wang, Yohan, Guyodo, Eugénia, Delacou, Jean Michel, Guignier, Olivier, Espeli, Alice, Lebreton, François, Guyot, Zoher, Gueroui
BioRxiv.

Lifetime of a structure evolving by cluster aggregation and particle loss, and application to postsynaptic scaffold domains
Vincent, Hakim, Jonas, Ranft
BioRxiv.

The Ty1 integrase nuclear localization signal is necessary and sufficient for retrotransposon targeting to tRNA genes
Amna, Asif‑Laidin, Christine, Conesa, Amandine, Bonnet, Camille, Grison, Indranil, Adhya, Rachid, Menouni, Hélène, Fayol, Noé, Palmic, Joël, Acker, Pascale, Lesage
BioRxiv.

Glial cell mechanosensitivity is reversed by adhesion cues
C., Tomba, C., Migdal, D., Fuard, C., Villard, A., Nicolas
BioRxiv.

Plant Small RNA Species Direct Gene Silencing in Pathogenic Bacteria as well as Disease Protection
Meenu, Singla‑Rastogi, Magali, Charvin, Odon, Thiébeauld, Alvaro L, Perez‑Quintero, Antinéa, Ravet, Antonio, Emidio‑Fortunato, Venugopal, Mendu, Lionel, Navarro
BioRxiv.

Model-based inference of punctuated molecular evolution
Marc, Manceau, Julie, Marin, Hélène, Morlon, Amaury, Lambert
BioRxiv.

Feasibility analysis of semiconductor voltage nanosensors for neuronal membrane potential sensing
Anastasia, Ludwig, Pablo, Serna, Lion, Morgenstein, Gaoling, Yang, Omri, Bar‑Elli, Gloria, Ortiz, Evan, Miller, Dan, Oron, Asaf, Grupi, Shimon, Weiss, Antoine, Triller
BioRxiv.

Aire-dependent genes undergo Clp1-mediated 3’UTR shortening associated with higher transcript stability in the thymus
Clotilde, Guyon, Nada, Jmari, Francine, Padonou, Yen‑Chin, Li, Olga, Ucar, Noriyuki, Fujikado, Fanny, Coulpier, Christophe, Blanchet, David E., Root, Matthieu, Giraud
BioRxiv.

The Genome of the Charophyte Alga Penium margaritaceum Bears Footprints of the Evolutionary Origins of Land Plants
Chen, Jiao, Iben, Sørensen, Xuepeng, Sun, Honghe, Sun, Hila, Behar, Saleh, Alseekh, Glenn, Philippe, Kattia Palacio, Lopez, Li, Sun, Reagan, Reed, Susan, Jeon, Reiko, Kiyonami, Sheng, Zhang, Alisdair R., Fernie, Harry, Brumer, David S., Domozych, Zhangjun, Fei, Jocelyn K. C., Rose
BioRxiv.

Cavefish brain atlases reveal functional and anatomical convergence across independently evolved populations
James, Jaggard, Evan, Lloyd, Anders, Yuiska, Adam, Patch, Yaouen, Fily, Johanna E., Kowalko, Lior, Appelbaum, Erik R., Duboue, Alex C., Keene
BioRxiv.

Topoisomerase VI participates in an insulator-like function that prevents H3K9me2 spreading into euchromatic islands
Louis‑Valentin, Méteignier, Cécile, Lecampion, Florent, Velay, Cécile, Vriet, Laura, Dimnet, Michel, Térèse, Martin, Rougée, Christian, Breuer, Ludivine, Soubigou‑Taconnat, Keiko, Sugimoto, Fredy, Barneche, Christophe, Laloi
BioRxiv.

Suppressor mutations in Mecp2-null mice reveal that the DNA damage response is key to Rett syndrome pathology
Adebola, Enikanolaiye, Julie, Ruston, Rong, Zeng, Christine, Taylor, Marijke, Shrock, Christie M., Buchovecky, Jay, Shendure, Elif, Acar, Monica J., Justice
BioRxiv.

Modelling Niemann-Pick disease type C in a human haploid cell line allows for patient variant characterization and clinical interpretation
Steven, Erwood, Reid A., Brewer, Teija M.I., Bily, Eleonora, Maino, Liangchi, Zhou, Ronald D., Cohn, Evgueni A., Ivakine
BioRxiv.

Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification
Jessica M., Warren, Thalia, Salinas‑Giegé, Guillaume, Hummel, Nicole L., Coots, Joshua M., Svendsen, Kristen C., Brown, Laurence, Maréchal‑Drouard, Daniel B., Sloan
BioRxiv.

Genetic architecture underlying changes in carotenoid accumulation during the evolution of the Blind Mexican cavefish, Astyanax mexicanus
Misty R., Riddle, Ariel, Aspiras, Fleur, Damen, John N., Hutchinson, Daniel, Chinnapen, Clifford J., Tabin
BioRxiv.

Loss of NPC1 enhances phagocytic uptake and impairs lipid trafficking in microglia
Alessio, Colombo, Lina, Dinkel, Stephan A., Müller, Laura Sebastian, Monasor, Martina, Schifferer, Ludovico, Cantuti‑Castelvetri, Jasmin, König, Lea, Vidatic, Tatiana, Bremova‑Ertl, Silva, Hecimovic, Mikael, Simons, Stefan F., Lichtenthaler, Michael, Strupp, Susanne A., Schneider, Sabina, Tahirovic
BioRxiv.

Defective excitatory/inhibitory synaptic balance and increased neuron apoptosis in a zebrafish model of Dravet syndrome
Alexandre, Brenet, Rahma, Hassan‑Abdi, Julie, Somkhit, Constantin, Yanicostas, Nadia, Soussi‑Yanicostas
BioRxiv.

Translational efficiency across healthy and tumor tissues is proliferation-related
Xavier, Hernandez‑Alias, Hannah, Benisty, Martin H., Schaefer, Luis, Serrano
BioRxiv.

Inducible degron-dependent depletion of the RNA polymerase I associated factor PAF53 demonstrates it is essential for cell growth and allows for the analysis of functional domains
Rachel, McNamar, Zakaria, Abu‑Adas, Katrina, Rothblum, Lawrence I., Rothblum
BioRxiv.

Active transcription regulates ORC/MCM distribution whereas replication timing correlates with ORC density in human cells
Nina, Kirstein, Alexander, Buschle, Xia, Wu, Stefan, Krebs, Helmut, Blum, Wolfgang, Hammerschmidt, Olivier, Hyrien, Benjamin, Audit, Aloys, Schepers
BioRxiv.

A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis
Fabian, Coscia, Sophia, Doll, Jacob Mathias, Bech, Andreas, Mund, Ernst, Lengyel, Jan, Lindebjerg, Gunvor Iben, Madsen, José M. A., Moreira, Matthias, Mann
BioRxiv.

Natural Epiallelic Variation is Associated with Quantitative Resistance to the Pathogen Plasmodiophora Brassicae
Benjamin, Liégard, Antoine, Gravot, Leandro, Quadrana, Yoann, Aigu, Juliette, Bénéjam, Christine, Lariagon, Jocelyne, Lemoine, Vincent, Colot, Maria J., Manzanares‑Dauleux, Mélanie, Jubault
BioRxiv.

Coordination of transcriptional and translational regulations in human epithelial cells infected by Listeria monocytogenes
Vinko, Besic, Fatemeh, Habibolahi, Benoît, Noël, Sebastian, Rupp, Auguste, Genovesio, Alice, Lebreton
BioRxiv.

Gain modulation and odor concentration invariance in early olfactory networks
Emiliano, Marachlian, Ramon, Huerta, Fernando F., Locatelli
BioRxiv.

Phenotypic plasticity as a mechanism of cave colonization and adaptation
Helena, Bilandžija, Breanna, Hollifield, Mireille, Steck, Guanliang, Meng, Mandy, Ng, Andrew D., Koch, Romana, Gračan, Helena, Ćetković, Megan L., Porter, Kenneth J., Renner, William R., Jeffery
BioRxiv.

Cheating emergences in the arbuscular mycorrhizal mutualism : a network and phylogenetic analysis
Benoît, Perez‑Lamarque, Marc‑André, Selosse, Maarja, Öpik, Hélène, Morlon, Florent, Martos
BioRxiv.

Disruption to NKCC1 impairs the response of myelinating Schwann cells to neuronal activity and leads to severe peripheral nerve pathology
Linde, Kegel, Katy LH, Marshall‑Phelps, Marion, Baraban, Rafael G, Almeida, Maria, Rubio‑Brotons, Anna, Klingseisen, Silvia, Benito‑Kwiecinski, Jason J, Early, Jenea, Bin, Matthew R, Livesey, Richard J, Poole, David A, Lyons
BioRxiv.

METTL2 forms a complex with the DALRD3 anticodon-domain binding protein to catalyze formation of 3-methylcytosine in specific arginine tRNA isoacceptors
Jenna M., Lentini, Dragony, Fu
BioRxiv.

A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum
Achal, Rastogi, FRJ, Vieira, Anne‑Flore, Deton‑Cabanillas, Alaguraj, Veluchamy, Catherine, Cantrel, Gaohong, Wang, Pieter, Vanormelingen, Chris, Bowler, Gwenael, Piganeau, Hanhua, Hu, Leila, Tirichine
BioRxiv.

TPR is required for the nuclear export of mRNAs and lncRNAs from intronless and intron-poor genes
Eliza S., Lee, Eric J., Wolf, Harrison W., Smith, Andrew, Emili, Alexander F., Palazzo
BioRxiv.

Chemotaxis and topotaxis add vectorially for amoeboid cell migration
Joeri A. J., Wondergem, Maria, Mytiliniou, Falko C. H. de, Wit, Thom G. A., Reuvers, David, Holcman, Doris, Heinrich
BioRxiv.

An altered metabolism could contribute to the low activation of neonatal CD8+T cells
Sánchez‑Villanueva José, Antonio, Rodríguez‑Jorge, Otoniel, Ramírez‑Pliego, Oscar, Rosas Salgado, Gabriela, Abou‑Jaoudé, Wassim, Hernandez, Céline, Naldi, Aurélien, Thieffry, Denis, Santana María, Angélica
BioRxiv.

SIRT6 as a transcriptional coactivator of GATA4 prevents doxorubicin cardiotoxicity independently of its deacylase activity
Minxian, Qian, Linyuan, Peng, Zuojun, Liu, Xiaolong, Tang, Zimei, Wang, Baohua, Liu
BioRxiv.

Microbial evolution reshapes soil carbon feedbacks to climate change
Elsa, Abs, Scott R., Saleska, Regis, Ferriere
BioRxiv.

Targeting of mitochondrial and cytosolic substrates of tRNA isopentenyltransferases : selection of differential tRNA-i6A37 identity subsets
Abdul, Khalique, Sandy, Mattijssen, Alexander F., Haddad, Richard J., Maraia
BioRxiv.

Development of vascular myogenic responses in zebrafish
Nabila, Bahrami, Sarah J., Childs
BioRxiv.

The laboratory domestication of zebrafish : from diverse populations to inbred substrains
Jaanus, Suurväli, Andrew R, Whiteley, Yichen, Zheng, Karim, Gharbi, Maria, Leptin, Thomas, Wiehe
BioRxiv.

Functional community assembly and turnover along elevation and latitude
Marta A., Jarzyna, Ignacio, Quintero, Walter, Jetz
BioRxiv.

Diatoms structure the plankton community based on selective segregation in the world’s ocean
Flora, Vincent, Chris, Bowler
BioRxiv.

Intraspecific diversity of fission yeast mitochondrial genomes
Yu‑Tian, Tao, Fang, Suo, Sergio, Tusso, Yan‑Kai, Wang, Song, Huang, Jochen B. W., Wolf, Li‑Lin, Du
BioRxiv.

An HSP90-regulated reduced-eye phenotype in Tribolium shows fitness benefits and thus provides evidence for evolutionary capacitance
Rasha, Aboelsoud, Joachim, Kurtz
BioRxiv.

Meningeal lymphatic endothelial cells fulfill scavenger endothelial cell function and employ Mrc1a for cargo uptake
Yvonne, Padberg, Andreas, van Impel, Max, van Lessen, Jeroen, Bussmann, Stefan, Schulte‑Merker
BioRxiv.

Distinct Basket Nucleoporins roles in Nuclear Pore Function and Gene Expression : Tpr is an integral component of the TREX-2 mRNA export pathway
Vasilisa, Aksenova, Hang Noh, Lee, Alexandra, Smith, Shane, Chen, Prasanna, Bhat, James, Iben, Carlos, Echeverria, Beatriz, Fontoura, Alexei, Arnaoutov, Mary, Dasso
BioRxiv.

GC content shapes mRNA decay and storage in human cells
Maïté, Courel, Yves, Clément, Dominika, Foretek, Olivia Vidal, Cruchez, Zhou, Yi, Marie‑Noëlle, Benassy, Michel, Kress, Caroline, Vindry, Marianne, Bénard, Clémentine, Bossevain, Christophe, Antoniewski, Antonin, Morillon, Patrick, Brest, Arnaud, Hubstenberger, Hugues Roest, Crollius, Nancy, Standart, Dominique, Weil
BioRxiv.

Biphasic impact of prenatal inflammation and macrophage depletion on the wiring of neocortical inhibitory circuits
Morgane Sonia, Thion, Coralie‑Anne, Mosser, Isabelle, Férézou, Pauline, Grisel, Sofia, Baptista, Donovan, Low, Florent, Ginhoux, Sonia, Garel, Etienne, Audinat
BioRxiv.

Synaptic mechanisms underlying the network state-dependent recruitment of VIP-expressing interneuron-specific interneurons in the CA1 hippocampus
Xiao, Luo, Alexandre, Guet‑McCreight, Vincent, Villette, Ruggiero, Francavilla, Beatrice, Marino, Simon, Chamberland, Frances K, Skinner, Lisa, Topolnik
BioRxiv.

Synchronization of mammalian motile cilia in the brain with hydrodynamic forces
Nicola, Pellicciotta, Evelyn, Hamilton, Jurij, Kotar, Marion, Faucourt, Nathalie, Degehyr, Nathalie, Spassky, Pietro, Cicuta
BioRxiv.

Characterizing and comparing phylogenetic trait data from their normalized Laplacian spectrum
Eric, Lewitus, Leandro, Aristide, Helene, Morlon
BioRxiv.

DNA sequence is a major determinant of tetrasome dynamics
O., Ordu, A., Lusser, N. H., Dekker
BioRxiv.

2dSS : a web server for protein secondary structure visualization
Diksha Priya, Lotun, Charlotte, Cochard, Fabio R.J, Vieira, Juliana Silva, Bernardes
BioRxiv.

Reconstructing wells from high density regions extracted from super-resolution single particle trajectories
P., Parutto, J., Heck, M., Heine, D., Holcman
BioRxiv.

DNA accessibility is not the primary determinant of chromatin-mediated gene regulation
Răzvan V., Chereji, Peter R., Eriksson, Josefina, Ocampo, David J., Clark
BioRxiv.

RSAT Var-tools : an accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding
Walter, Santana‑Garcia, Maria, Rocha‑Acevedo, Lucia, Ramirez‑Navarro, Yvon, Mbouamboua, Denis, Thieffry, Morgane, Thomas‑Chollier, Bruno, Contreras‑Moreira, Jacques, van Helden, Alejandra, Medina‑Rivera
BioRxiv.

Cell-type specific concentration regulation of the basal transcription factor TFIIH
Lise‑Marie, Donnio, Catherine, Miquel, Wim, Vermeulen, Giuseppina, Giglia‑Mari, Pierre‑Olivier, Mari
BioRxiv.

Reliable Phylogenetic Regressions for Multivariate Comparative Data : Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats
Julien, Clavel, Hélène, Morlon
BioRxiv.

Noda-like RNA viruses infecting Caenorhabditis nematodes : sympatry, diversity and reassortment
Lise, Frézal, Hyeim, Jung, Stephen, Tahan, David, Wang, Marie‑Anne, Félix
BioRxiv.

Suppression of transcytosis regulates zebrafish blood-brain barrier development
Natasha M., O’Brown, Sean G., Megason, Chenghua, Gu
BioRxiv.

Opposing chromatin remodelers control transcription initiation frequency and start site selection
Slawomir, Kubik, Drice, Challal, Maria Jessica, Bruzzone, René, Dreos, Stefano, Mattarocci, Philipp, Bucher, Domenico, Libri, David, Shore
BioRxiv.

Gene-level quantitative trait mapping in an expanded C. elegans multiparent experimental evolution panel
Luke M., Noble, Matthew V., Rockman, Henrique, Teotónio
BioRxiv.

Characterization of pathology-inducing α-synuclein species from human diseased brain tissue
John D., Graef, Nina, Hoque, Craig, Polson, Ling, Yang, Lawrence, Iben, Yang, Cao, Nino, Devidze, Michael K., Ahlijanian, Jere E., Meredith
BioRxiv.

Estimating Diversity Through Time using Molecular Phylogenies : Old and Species-Poor Frog Families are the Remnants of a Diverse Past
O., Billaud, D. S., Moen, T. L., Parsons, H., Morion
BioRxiv.

Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in histone H3 Lys-4 trimethylation independently from histone H2B monoubiquitination
Anne‑Sophie, Fiorucci, Clara, Bourbousse, Lorenzo, Concia, Martin, Rougée, Anne‑Flore, Deton‑Cabanillas, Gérald, Zabulon, Elodie, Layat, David, Latrasse, SoonKap, Kim, Nicole, Chaumont, Bérangère, Lombard, David, Stroebel, Sophie, Lemoine, Ammara, Mohammad, Corinne, Blugeon, Damarys, Loew, Christophe, Bailly, Chris, Bowler, Moussa, Benhamed, Fredy, Barneche
BioRxiv.

An RNA-binding protein secreted by Listeria monocytogenes activates RIG-I signaling
Alessandro, Pagliuso, To Nam, Tham, Eric, Allemand, Stevens, Robertin, Bruno, Dupuy, Quentin, Bertrand, Christophe, Bécavin, Mikael, Koutero, Valérie, Najburg, Marie‑Anne, Nahori, Fabrizia, Stavru, Andréa, Dessen, Christian, Muchard, Alice, Lebreton, Anastassia V., Komarova, Pascale, Cossart
BioRxiv.

Non-coding AUG circRNAs constitute an abundant and conserved subclass of circles
Lotte VW, Stagsted, Katrine M, Nielsen, Iben, Daugaard, Thomas B, Hansen
BioRxiv.

An open-source and low-cost feeding system for zebrafish facilities
Astou, Tangara, Gérard, Paresys, Firas, Bouallague, Yvon, Cabirou, Jozsua, Fodor, Victor, Llobet, Germán, Sumbre
BioRxiv.

Sen1 is required for RNA Polymerase III transcription termination in an R-loop independent manner
Julieta, Rivosecchi, Marc, Larochelle, Camille, Teste, Frédéric, Grenier, Amélie, Malapert, Emiliano P., Ricci, Pascal, Bernard, François, Bachand, Vincent, Vanoosthuyse
BioRxiv.

Universal trends of post-duplication evolution revealed by the genomes of 13 Paramecium species sharing an ancestral whole-genome duplication
Jean‑Francois, Gout, Parul, Johri, Olivier, Arnaiz, Thomas G., Doak, Simran, Bhullar, Arnaud, Couloux, Fréderic, Guérin, Sophie, Malinsky, Linda, Sperling, Karine, Labadie, Eric, Meyer, Sandra, Duharcourt, Michael, Lynch
BioRxiv.

Interdependent Phenotypic and Biogeographic Evolution Driven by Biotic Interactions
Ignacio, Quintero, Michael J., Landis
BioRxiv.

RASSF1A is required for the maintenance of nuclear actin levels
Maria, Chatzifrangkeskou, Dafni‑Eleftheria, Pefani, Michael, Eyres, Iolanda, Vendrell, Roman, Fischer, Daniela, Pankova, Eric, O’Neill
BioRxiv.

An unusual nucleosomal sequence pattern is enriched in mammalian genes
Gregory M., Wright, Feng, Cui
BioRxiv.

Blood vessels guide Schwann cell migration in the adult demyelinated CNS through Eph/ephrin signaling
Beatriz, Garcia‑Diaz, Corinne, Bachelin, Fanny, Coulpier, Gaspard, Gerschenfeld, Cyrille, Deboux, Violetta, Zujovic, Patrick, Charnay, Piotr, Topilko, Anne Baron‑Van, Evercooren
BioRxiv.

Evolution of the D. melanogaster chromatin landscape and its associated proteins
Elise, Parey, Anton, Crombach
BioRxiv.

From individuals to populations : How intraspecific competition shapes thermal reaction norms
François, Mallard, Vincent Le, Bourlot, Christie Le, Coeur, Monique, Avnaim, Romain, Péronnet, David, Claessen, Thomas, Tully
BioRxiv.

The Largest Subunit of Human TFIIIC Complex, TFIIIC220, a Lysine Acetyltransferase Targets Histone H3K18
Moumita, Basu, Ramachandran, Boopathi, Sadhan, Das, Tapas K, Kundu
BioRxiv.

Dynamics of centriole amplification in centrosome-depleted brain multiciliated progenitors
Olivier, Mercey, Adel Al, Jord, Philippe, Rostaing, Alexia, Mahuzier, Aurélien, Fortoul, Amélie‑Rose, Boudjema, Marion, Faucourt, Nathalie, Spassky, Alice, Meunier
BioRxiv.

Genome wide screen reveals a specific interaction between autosome and X that is essential for hybrid male sterility
Yu, Bi, Xiaoliang, Ren, Runsheng, Li, Qiutao, Ding, Dongying, Xie, Zhongying, Zhao
BioRxiv.

Mapping the bacterial ecology on the phyllosphere of grass hay and the potential hazards of soaking fodder for horse gut health
Meriel JS, Moore‑Colyer, Annette, Longland, Patricia, Harris, Susan, Crosthwaite
BioRxiv.

Codon usage and amino acid identity are major determinants of mRNA stability in humans
Megan E., Forrest, Ashrut, Narula, Thomas J., Sweet, Daniel, Arango, Gavin, Hanson, James, Ellis, Shalini, Oberdoerffer, Jeff, Coller, Olivia S., Rissland
BioRxiv.

Super-resolution Molecular Map of Basal Foot Reveals Novel Cilium in Airway Multiciliated Cells
Quynh P.H., Nguyen, Zhen, Liu, Rashmi, Nanjundappa, Alexandre, Megherbi, Nathalie, Delgehyr, Hong, Ouyang, Lorna, Zlock, Etienne, Coyaud, Estelle, Laurent, Sharon, Dell, Walter, Finkbeiner, Theo, Moraes, Brian, Raught, Kirk, Czymmek, Alice, Munier, Moe R., Mahjoub, Vito, Mennella
BioRxiv.

Enhancer-gene maps in the human and zebrafish genomes using evolutionary linkage conservation
Yves, Clément, Patrick, Torbey, Pascale, Gilardi‑Hebenstreit, Hugues Roest, Crollius
BioRxiv.

Linker histones regulate fine-scale chromatin organization and modulate developmental decisions in Arabidopsis
Kinga, Rutowicz, Maciej, Lirski, Benoît, Mermaz, Jasmin, Schubert, Gianluca, Teano, Imen, Mestiri, Magdalena A., Kroteń, Tohnyui Ndinyanka, Fabrice, Simon, Fritz, Stefan, Grob, Christoph, Ringli, Lusik, Cherkezyan, Fredy, Barneche, Andrzej, Jerzmanowski, Célia, Baroux
BioRxiv.

Glycerol phosphate acyltransferase 6 controls filamentous pathogen interactions and cell wall properties of the tomato and Nicotiana benthamiana leaf epidermis
Stuart, Fawke, Thomas A., Torode, Anna, Gogleva, Eric A., Fich, Iben, Sørensen, Temur, Yunusov, Jocelyn K.C., Rose, Sebastian, Schornack
BioRxiv.

Why would parthenogenetic females systematically produce males who never transmit their genes to females ?
Manon, Grosmaire, Caroline, Launay, Marion, Siegwald, Marie‑Anne, Félix, Pierre‑Henri, Gouyon, Marie, Delattre
BioRxiv.

Transposon accumulation lines uncover histone H2A.Z-driven integration bias towards environmentally responsive genes
Leandro, Quadrana, Mathilde, Etcheverry, Arthur, Gilly, Erwann, Caillieux, Mohammed‑Amin, Madoui, Julie, Guy, Amanda Bortolini, Silveira, Stefan, Engelen, Victoire, Baillet, Patrick, Wincke, Jean‑Marc, Aury, Vincent, Colot
BioRxiv.

Fast two-photon volumetric imaging of an improved voltage indicator reveals electrical activity in deeply located neurons in the awake brain
Mariya, Chavarha, Vincent, Villette, Ivan K., Dimov, Lagnajeet, Pradhan, Stephen W., Evans, Dongqing, Shi, Renzhi, Yang, Simon, Chamberland, Jonathan, Bradley, Benjamin, Mathieu, Francois, St‑Pierre, Mark J., Schnitzer, Guoqiang, Bi, Katalin, Toth, Jun, Ding, Stéphane, Dieudonné, Michael Z., Lin
BioRxiv.

Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing
Tiina, Viita, Salla, Kyheröinen, Bina, Prajapati, Jori, Virtanen, Markku, Varjosalo, Maria K., Vartiainen
BioRxiv.

Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping
Kathryn M., Tabor, Gregory D., Marquart, Christopher, Hurt, Trevor S., Smith, Alexandra K., Geoca, Ashwin A., Bhandiwad, Abhignya, Subedi, Jennifer L., Sinclair, Nicholas F., Polys, Harold A., Burgess
BioRxiv.

Mapping DNA replication with nanopore sequencing
Magali, Hennion, Jean‑Michel, Arbona, Corinne, Cruaud, Florence, Proux, Benoît Le, Tallec, Elizaveta, Novikova, Stefan, Engelen, Arnaud, Lemainque, Benjamin, Audit, Olivier, Hyrien
BioRxiv.

Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons
Ye, Zhang, Tin Ki, Tsang, Eric A., Bushong, Li‑An, Chu, Ann‑Shyn, Chiang, Mark H., Ellisman, Jürgen, Reingruber, Chih‑Ying, Su
BioRxiv.

Changes in mRNA abundance drive shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription
Sarah, Gilbertson, Joel D., Federspiel, Ella, Hartenian, Ileana M., Cristea, Britt, Glaunsinger
BioRxiv.

Quantitative study of the somitogenetic wavefront in zebrafish
Weiting, Zhang, Bertrand, Ducos, Marine, Delagrange, Sophie, Vriz, David, Bensimon
BioRxiv.

Transfer RNA Genes Affect Chromosome Structure and Function via Local Effects
Omar, Hamdani, Namrita, Dhillon, Tsung‑Han S., Hsieh, Takahiro, Fujita, Josefina, Ocampo, Jacob G., Kirkland, Josh, Lawrimore, Tetsuya J., Kobayashi, Brandon, Friedman, Derek, Fulton, Kenneth Y., Wu, Răzvan V., Chereji, Masaya, Oki, Kerry, Bloom, David J, Clark, Oliver J., Rando, Rohinton T., Kamakaka
BioRxiv.

Evolution of DNA methylation in Papio baboons
Tauras, Vilgalys, Jeffrey, Rogers, Clifford, Jolly, Sayan, Mukherjee, Jenny, Tung
BioRxiv.

Cerebrovascular Injuries Induce Lymphatic Invasion into Brain Parenchyma to Guide Vascular Regeneration in Zebrafish
Jingying, Chen, Jianbo, He, Qifen, Yang, Yaoguang, Zhang, Lingfei, Luo
BioRxiv.

An interaction network of the human SEPT9 established by quantitative mass spectrometry reveals an interplay with myosin motors
Matthias, Hecht, Reinhild, Rösler, Sebastian, Wiese, Nils, Johnsson, Thomas, Gronemeyer
BioRxiv.

Necessity and contingency in developmental genetic screens : LIN-3, Wnt and semaphorin pathways in vulval induction of the nematode Oscheius tipulae
Amhed M., Vargas‑Velazquez, Fabrice, Besnard, Marie‑Anne, Félix
BioRxiv.

Active intermixing of indirect and direct neurons builds the striatal mosaic
Andrea, Tinterri, Fabien, Menardy, Marco A., Diana, Ludmilla, Lokmane, Maryama, Keita, Fanny, Coulpier, Sophie, Lemoine, Caroline, Mailhes, Benjamin, Mathieu, Paloma, Merchan‑Sala, Kenneth, Campbell, Ildiko, Gyory, Rudolf, Grosschedl, Daniela, Popa, Sonia, Garel
BioRxiv.

Mild drought induces phenotypic and DNA methylation plasticity but no transgenerational effects in Arabidopsis
Tom JM, Van Dooren, Amanda, Bortolini Silveira, Elodie, Gilbault, José M., Jiménez‑Gómez, Antoine, Martin, Liên, Bach, Sébastien, Tisné, Leandro, Quadrana, Olivier, Loudet, Vincent, Colot
BioRxiv.

Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes
Sylvain, Legrand, Thibault, Caron, Florian, Maumus, Sol, Schvartzman, Leandro, Quadrana, Eléonore, Durand, Sophie, Gallina, Maxime, Pauwels, Clément, Mazoyer, Lucie, Huyghe, Vincent, Colot, Marc, Hanikenne, Vincent, Castric
BioRxiv.

A potential role for epigenetic processes in the acclimation response to elevated pCO2 in the model diatom Phaeodactylum tricornutum
Ruiping, Huang, Jiancheng, Ding, Kunshan, Gao, Maria Helena Cruz, de Carvalho, Leila, Tirichine, Chris, Bowler, Xin, Lin
BioRxiv.

Nuclear actin is required for transcription during Drosophila oogenesis
Maria, Sokolova, Henna M., Moore, Bina, Prajapati, Joseph, Dopie, Leena, Meriläinen, Mikko, Honkanen, Rita Cerejeira, Matos, Minna, Poukkula, Ville, Hietakangas, Maria K., Vartiainen
BioRxiv.

Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells
Yunliang, Zang, Stéphane, Dieudonné, Erik De, Schutter
BioRxiv.

Active fluctuations modulate gene expression in mouse oocytes
Maria, Almonacid, Stephany, El‑Hayek, Alice, Othmani, Isabelle, Queguiner, Fanny, Coulpier, Sophie, Lemoine, Leila, Bastianelli, Christophe, Klein, Tristan, Piolot, Philippe, Mailly, Raphaël, Voituriez, Auguste, Genovesio, Marie‑Hélène, Verlhac
BioRxiv.

Separation and Loss of Centrioles From Primordidal Germ Cells to Mature Oocytes in the Mouse
Calvin, Simerly, Marion, Manil‑Ségalen, Carlos, Castro, Carrie, Hartnett, Dong, Kong, Marie‑Hélène, Verlhac, Jadranka, Loncarek, Gerald, Schatten
BioRxiv.

Yeast PAF1 complex restricts the accumulation of RNA polymerase III and counters the replication stress on the transcribed genes
Pratibha, Bhalla, Dipti, Vernekar, Ashutosh, Shukla, Benoit, Gilquin, Yohann, Couté, Purnima, Bhargava
BioRxiv.

Cell adhesion promoted by a unique Shigella IpaA vinculin- and talin-binding site
Cesar, Valencia‑Gallardo, Charles, Bou‑Nader, Daniel, Aguilar, Nathalie, Carayol, Nicole, Quenech’Du, Ludovic, Pecqueur, HaJeung, Park, Marc, Fontecave, Tina, Izard, Guy Tran, Van Nhieu
BioRxiv.

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise
Stefanie, Schöne, Melissa, Bothe, Edda, Einfeldt, Marina, Borschiwer, Philipp, Benner, Martin, Vingron, Morgane, Thomas‑Chollier, Sebastiaan H., Meijsing
BioRxiv.

Dual-layer transposon repression in heads of Drosophila melanogaster
Marius, van den Beek, Bruno, da Silva, Juliette, Pouch, Mohammed el amine, Ali Chaouche, Clément, Carré, Christophe, Antoniewski
BioRxiv.

DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis
Amr, Nassrallah, Martin, Rougée, Clara, Bourbousse, Stéphanie, Drevensek, Sandra, Fonseca, Elisa, Iniesto, Ouardia, Ait‑Mohamed, Anne‑Flore, Deton‑Cabanillas, Gerald, Zabulonb, Ikhlak, Ahmed, David, Stroebel, Vanessa, Masson, Bérangère, Lombard, Dominique, Eeckhout, Kris, Gevaert, Damarys, Loew, Auguste, Genovesio, Cécile, Breyton, Geert, de Jaeger, Chris, Bowler, Vicente, Rubio, Fredy, Barneche
BioRxiv.

Inter-species conservation of organisation and function between non-homologous regional centromeres
Pin, Tong, Alison L., Pidoux, Nicholas R.T., Toda, Ryan, Ard, Harald, Berger, Manu, Shukla, Jesus, Torres‑Garcia, Carolin A., Mueller, Conrad A., Nieduszynski, Robin C., Allshire
BioRxiv.

Ribosome provisioning activates a bistable switch coupled to fast exit from stationary phase
P., Remigi, G.C., Ferguson, S. De, Monte, P.B., Rainey
BioRxiv.

Non-cell autonomous OTX2 homeoprotein regulates visual cortex plasticity through Gadd45b/g
Jessica, Apulei, Namsuk, Kim, Damien, Testa, Jérôme, Ribot, David, Morizet, Clémence, Bernard, Laurent, Jourdren, Corinne, Blugeon, Ariel A., Di Nardo, Alain, Prochiantz
BioRxiv.

The CoLoMoTo Interactive Notebook : Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Aurélien, Naldi, Céline, Hernandez, Nicolas, Levy, Gautier, Stoll, Pedro T., Monteiro, Claudine, Chaouiya, Tomáš, Helikar, Andrei, Zinovyev, Laurence, Calzone, Sarah, Cohen‑Boulakia, Denis, Thieffry, Loïc, Paulevé
BioRxiv.

Logical modelling and analysis of cellular regulatory networks with GINsim 3.0
Aurélien, Naldi, Céline, Hernandez, Wassim, Abou‑Jaoudé, Pedro T., Monteiro, Claudine, Chaouiya, Denis, Thieffry
BioRxiv.

Enrichment of gene variants associated with treatable genetic disorders in psychiatric populations
Venuja, Sriretnakumar, Ricardo, Harripaul, John B., Vincent, James L., Kennedy, Joyce, So
BioRxiv.

Transcriptional control and exploitation of an immune-responsive family of plant retrotransposons
Jérôme, Zervudacki, Agnès, Yu, Delase, Amesefe, Jingyu, Wang, Jan, Drouaud, Lionel, Navarro, Angélique, Deleris
BioRxiv.

Sequence-directed action of RSC remodeler and pioneer factors positions +1 nucleosome to facilitate transcription
Slawomir, Kubik, Eoghan, O’Duibhir, Wim, de Jonge, Stefano, Mattarocci, Benjamin, Albert, Jean‑Luc, Falcone, Maria Jessica, Bruzzone, Frank C.P., Holstege, David, Shore
BioRxiv.

Transcription-dependent regulation of replication dynamics modulates genome stability
Marion, Blin, Benoît, Le Tallec, Viola, Naehse, Mélanie, Schmidt, Gael A., Millot, Marie‑Noëlle, Prioleau, Michelle, Debatisse
BioRxiv.

Ubiquitous abundance distribution of non-dominant plankton across the world’s ocean
Enrico, Ser‑Giacomi, Lucie, Zinger, Shruti, Malviya, Colomban, De Vargas, Eric, Karsenti, Chris, Bowler, Silvia, De Monte
BioRxiv.

DeepHINT : Understanding HIV-1 integration via deep learning with attention
Hailin, Hu, An, Xiao, Sai, Zhang, Yangyang, Li, Xuanling, Shi, Tao, Jiang, Linqi, Zhang, Lei, Zhang, Jianyang, Zeng
BioRxiv.

Chromosome evolution at the origin of the ancestral vertebrate genome
Christine, Sacerdot, Alexandra, Louis, Céline, Bon, Hugues, Roest Crollius
BioRxiv.

Universal temporal rate of DNA replication origin firing : A balance between origin activation and passivation
Jean‑Michel, Arbona, Arach, Goldar, Olivier, Hyrien, Alain, Arneodo, Benjamin, Audit
BioRxiv.

Characterizing the Liquid-liquid Phase Co-existence in Biomembrane : Insights from Local Non-affine Deformation and Topological Rearrangements
Sahithya S., Iyer, Madhusmita, Tripathy, Anand, Srivastava
BioRxiv.

High-throughput optical mapping of replicating DNA
Francesco, De Carli, Nikita, Menezes, Wahiba, Berrabah, Valérie, Barbe, Auguste, Genovesio, Olivier, Hyrien
BioRxiv.

Ranked tree shapes, non-random extinctions and the loss of phylogenetic diversity
Odile, Maliet, Fanny, Gascuel, Amaury, Lambert
BioRxiv.

Aquaporin-4 dependent glymphatic solute transport in rodent brain
Humberto, Mestre, Benjamin T., Kress, Wenyan, Zou, Tinglin, Pu, Giridhar, Murlidharan, Ruth M. Castellanos, Rivera, Matthew J., Simon, Martin M., Pike, Benjamin A, Plog, Anna L. R., Xavier, Alexander S., Thrane, Iben, Lundgaard, John H., Thomas, Ming, Xiao, Aravind, Asokan, Jeffrey J., Miff, Maiken, Nedergaard
BioRxiv.

Redundancy principle for optimal random search in biology
Z., Schuss, K., Basnayake, D., Holcman
BioRxiv.

Dengue modeling in rural Cambodia : statistical performance versus epidemiological relevance
Clara, Champagne, Richard, Paul, Sowath, Ly, Veasna, Duong, Rithea, Leang, Bernard, Cazelles
BioRxiv.

Partial selfing eliminates inbreeding depression while maintaining genetic diversity
Ivo M., Chelo, Bruno, Afonso, Sara, Carvalho, Ioannis, Theologidis, Christine, Goy, Ania, Pino‑Querido, Stephen R., Proulx, Henrique, Teotónio
BioRxiv.

Slower environmental change hinders adaptation from standing genetic variation
Thiago S., Guzella, Snigdhadip, Dey, Ivo M., Chelo, Ania, Pino‑Querido, Veronica F., Pereira, Stephen R., Proulx, Henrique, Teotónio
BioRxiv.

A simple and powerful analysis of lateral subdiffusion using single particle tracking
Marianne, Renner, Lili, Wang, Sabine, Levi, Laetitia, Hennekinne, Antoine, Triller
BioRxiv.

miR-128 inhibits telomerase activity by targeting TERT mRNA
Herlinda, Guzman, Katie, Sanders, Adam, Idica, Aurore, Bochnakian, Douglas, Jury, Iben, Daugaard, Dimitrios G, Zisoulis, Irene Munk, Pedersen
BioRxiv.

An epigenetic mechanism for cavefish eye degeneration
Aniket V., Gore, Kelly A., Tomins, James, Iben, Li, Ma, Daniel, Castranova, Andrew, Davis, Amy, Parkhurst, William R., Jeffery, Brant M., Weinstein
BioRxiv.

miR-128-induced LINE-1 restriction is dependent on down-regulation of hnRNPA1
Lianna, Fung, Herlinda, Guzman, Evgueni, Sevrioukov, Adam, Idica, Eddie, Park, Aurore, Bochnakien, Iben, Daugaard, Douglas, Jury, Ali, Mortazavi, Dimitrios G, Zisoulis, Irene Munk, Pedersen
BioRxiv.

MicroRNA miR-128 represses LINE-1 (L1) retrotransposition by downregulating the nuclear import factor TNPO1
Adam, Idica, Evgueni A, Sevrioukov, Dimitri G, Zisoulis, Matthias, Hamdorf, Iben, Daugaard, Pavan, Kadandale, Irene, Pedersen
BioRxiv.

Interferon-inducible miR-128 modulates HIV-1 replication by targeting TNPO3 mRNA
Aurore, Bochnakian, Dimitrios G, Zisoulis, Adam, Idica, Anjie, Zhen, Vineet N, KewalRamani, Iben, Daugaard, Matthias, Hamdorf, Scott, Kitchen, KyeongEun, Lee, Irene Munk, Pedersen
BioRxiv.

Cyclin G and the Polycomb Repressive Complexes PRC1 and PR-DUB cooperate for developmental stability
Delphine, Dardalhon‑Cuménal, Jérôme, Deraze, Camille A, Dupont, Valérie, Ribeiro, Anne, Coléno‑Costes, Juliette, Pouch, Stéphane, Le Crom, Hélène, Thomassin, Vincent, Debat, Neel B, Randsholt, Frédérique, Peronnet
BioRxiv.

Integrative analysis of large scale transcriptome data draws a comprehensive functional landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms
Achal, Rastogi, Uma, Maheswari, Richard G., Dorrell, Florian, Maumus, Fabio Rocha, Jimenez Vieira, Adam, Kustka, James, McCarthy, Andy E., Allen, Paul, Kersey, Chris, Bowler, Leila, Tirichine
BioRxiv.

Detecting environment-dependent diversification from phylogenies : a simulation study and some empirical illustrations
Eric, Lewitus, Hélène, Morlon
BioRxiv.

Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice
Cécile, Milet, Marianne, Bléher, Kassandra, Allbright, Mickael, Orgeur, Fanny, Coulpier, Delphine, Duprez, Emmanuelle, Havis
BioRxiv.

The mechanism of transcription start site selection
Libing, Yu, Jared T., Winkelman, Chirangini, Pukhrambam, Terence R., Strick, Bryce E., Nickels, Richard H., Ebright
BioRxiv.

Soil community assembly varies across body sizes in a tropical forest
Lucie, Zinger, Pierre, Taberlet, Heidy, Schimann, Aurélie, Bonin, Frédéric, Boyer, Marta De, Barba, Philippe, Gaucher, Ludovic, Gielly, Charline, Giguet‑Covex, Amaia, Iribar, Maxime, Réjou‑Méchain, Gilles, Rayé, Delphine, Rioux, Vincent, Schilling, Blaise, Tymen, Jérôme, Viers, Cyril, Zouiten, Wilfried, Thuiller, Eric, Coissac, Jérôme, Chave
BioRxiv.

Evolution of gene expression after whole-genome duplication : new insights from the spotted gar genome
Jeremy, Pasquier, Ingo, Braasch, Peter, Batzel, Cedric, Cabau, Jérome, Montfort, Thaovi, Nguyen, Elodie, Jouanno, Camille, Berthelot, Christophe, Klopp, Laurent, Journot, John H., Postlethwait, Yann, Guiguen, Julien, Bobe
BioRxiv.

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
Ralph, Stadhouders, Enrique, Vidal, François, Serra, Bruno Di, Stefano, François, Le Dily, Javier, Quilez, Antonio, Gomez, Samuel, Collombet, Clara, Berenguer, Yasmina, Cuartero, Jochen, Hecht, Guillaume, Filion, Miguel, Beato, Marc A., Marti‑Renom, Thomas, Graf
BioRxiv.

Cerebellar re-encoding of self-generated head movements
Guillaume P., Dugué, Matthieu, Tihy, Boris, Gourévitch, Clément, Léna
BioRxiv.

A computational toolbox and step-by-step tutorial for the analysis of neuronal population dynamics in calcium imaging data
Sebastián A., Romano, Verónica, Pérez‑Schuster, Adrien, Jouary, Alessia, Candeo, Jonathan, Boulanger‑Weill, Germán, Sumbre
BioRxiv.

The genealogical decomposition of a matrix population model with applications to the aggregation of stages
François, Bienvenu, Erol, Akçay, Stéphane, Legendre, David M., McCandlish
BioRxiv.

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns
Baptiste, Saudemont, Alexandra, Popa, Joanna L., Parmley, Vincent, Rocher, Corinne, Blugeon, Anamaria, Necsulea, Eric, Meyer, Laurent, Duret
BioRxiv.

Initiation of DNA replication requires actin dynamics and formin activity
Parisis, Nikolaos, Liliana, Krasinska, Bethany, Harker, Serge, Urbach, Michel, Rossignol, Alain, Camasses, James, Dewar, Nathalie, Morin, Daniel, Fisher
BioRxiv.

RSAT matrix-clustering : dynamic exploration and redundancy reduction of transcription factor binding motif collections
Jaime Abraham, Castro‑Mondragon, Sébastien, Jaeger, Denis, Thieffry, Morgane, Thomas‑Chollier, Jacques, van Helden
BioRxiv.

Cerebellar learning using perturbations
Guy, Bouvier, Johnatan, Aljadeff, Claudia, Clopath, Célian, Bimbard, Jonas, Ranft, Antonin, Blot, Jean‑Pierre, Nadal, Nicolas, Brunel, Vincent, Hakim, Boris, Barbour
BioRxiv.

Evolutionary forces affecting synonymous variations in plant genomes
Yves, Clément, Gautier, Sarah, Yan, Holtz, Felix, Homa, Stéphanie, Pointet, Sandy, Contreras, Benoit, Nabholz, François, Sabot, Laure, Sauné, Morgane, Ardisson, Roberto, Bacilieri, Guillaume, Besnard, Angélique, Berger, Céline, Cardi, Fabien, De Bellis, Olivier, Fouet, Cyril, Jourda, Bouchaib, Khadari, Claire, Lanaud, Thierry, Leroy, David, Pot, Christopher, Sauvage, Nora, Scarcelli, James, Tregear, Yves, Vigouroux, Nabila, Yahiaoui, Manuel, Ruiz, Sylvain, Santoni, Jean‑Pierre, Labouisse, Jean‑Louis, Pham, Jacques, David, Sylvain, Glémin
BioRxiv.

Crowding-induced transcriptional bursts dictate polymerase and nucleosome density profiles along genes
Aafke A van den, Berg, Martin, Depken
BioRxiv.

Structure in the variability of the basic reproductive number (R0) for Zika epidemics in the Pacific islands
Clara, Champagne, David Georges, Salthouse, Richard, Paul, Van‑Mai, Cao‑Lormeau, Benjamin, Roche, Bernard, Cazelles
BioRxiv.

How human behavior drives the propagation of an emerging infection : the case of the 2014 Chikungunya outbreak in Martinique
Benjamin, Roche, Béatrice, Gaillard, Lucas, Léger, Renélise, Moutenda, Thomas, Sochacki, Bernard, Cazelles, Martine, Ledrans, Alain, Blateau, Didier, Fontenille, Manuel, Etienne, Frédéric, Simard, Marcel, Salathé, André, Yébakima
BioRxiv.

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses
Simon, Roux, Jennifer R., Brum, Bas E., Dutilh, Shinichi, Sunagawa, Melissa B., Duhaime, Alexander, Loy, Bonnie T., Poulos, Natalie, Solonenko, Elena, Lara, Julie, Poulain, Stéphane, Pesant, Stefanie, Kandels‑Lewis, Céline, Dimier, Marc, Picheral, Sarah, Searson, Corinne, Cruaud, Adriana, Alberti, Carlos M., Duarte, Josep M., Gasol, Dolors, Vaqué, Peer, Bork, Silvia G., Acinas, Patrick, Wincker, Matthew B., Sullivan, Silvia G., Acinas, Peer, Bork, Emmanuel, Boss, Chris, Bowler, Colomban de, Vargas, Michael, Follows, Gabriel, Gorsky, Nigel, Grimsley, Pascal, Hingamp, Daniele, Iudicone, Olivier, Jaillon, Stefanie, Kandels‑Lewis, Lee, Karp‑Boss, Eric, Karsenti, Uros, Krzic, Fabrice, Not, Hiroyuki, Ogata, Stephane, Pesant, Jeroen, Raes, Emmanuel G., Reynaud, Christian, Sardet, Mike, Sieracki, Sabrina, Speich, Lars, Stemmann, Matthew B., Sullivan, Shinichi, Sunagawa, Didier, Velayoudon, Patrick, Wincker
BioRxiv.

Automatic classification of behavior in zebrafish larvae
Adrien, Jouary, German, Sumbre
BioRxiv.

On the evolutionary origins of equity
Stéphane, Debove, Nicolas, Baumard, Jean‑Baptiste, André
BioRxiv.

Discovery of a Natural Microsporidian Pathogen with a Broad Tissue Tropism in Caenorhabditis elegans
Robert J., Luallen, Aaron W., Reinke, Linda, Tong, Michael R., Botts, Marie‑Anne, Félix, Emily R., Troemel
BioRxiv.

Chromatin mobility after DNA damage is modified to enhance long distance explorations and minimize local resampling
Judith, Miné‑Hattab, Vincent, Recamier, Ignacio, Izeddin, Rodney, Rothstein, Xavier, Darzacq
BioRxiv.

Estimating the effect of competition on trait evolution using maximum likelihood inference
Jonathan, Drury, Julien, Clavel, Marc, Manceau, Hélène, Morlon
BioRxiv.

Characterizing and comparing phylogenies from their Laplacian spectrum
Eric, Lewitus, Hélène, Morlon
BioRxiv.

Cooperative development of logical modelling standards and tools with CoLoMoTo
Aurélien, Naldi, Pedro T., Monteiro, Christoph, Müssel, Hans A., Kestler, Denis, Thieffry, Ioannis, Xenarios, Julio, Saez‑Rodriguez, Tomas, Helikar, Claudine, Chaouiya
BioRxiv.

Analysis of the study of the cerebellar pinceau by Korn and Axelrad
Antonin, Blot, Boris, Barbour
BioRxiv.