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Publications

BioRxiv

Structural Analysis of Simultaneous Activation and Inhibition of γ-Secretase Activity in Development of Drugs for Alzheimer’s disease
Svedružić Željko M., Vrbnjak Katarina, Martinović Manuel, Miletić Vedran
BioRxiv.

Fluorescent secreted bacterial effectors reveal active intravacuolar proliferation of Listeria monocytogenes in epithelial cells
Peron‑Cane Caroline, Fernandez José‑Carlos, Leblanc Julien, Wingertsmann Laure, Gautier Arnaud, Desprat Nicolas, Lebreton Alice
BioRxiv.

Function of the HYDROXYCINNAMOYL-CoA:SHIKIMATE HYDROXYCINNAMOYL TRANSFERASE is evolutionarily conserved in embryophytes
Kriegshauser Lucie, Knosp Samuel, Grienenberger Etienne, Gütle Desirée D., Sørensen Iben, Herrgott Laurence, Zumsteg Julie, Rose Jocelyn K.C., Reski Ralf, Werck‑Reichhart Danièle, Renault Hugues
BioRxiv.

Early Emergence and Long-Term Persistence of HIV-Infected T Cell Clones in Children
Bale Michael J., Katusiime Mary Grace, Wells Daria, Wu Xiaolin, Spindler Jonathan, Halvas Elias K., Cyktor Joshua C., Wiegand Ann, Shao Wei, Cotton Mark F., Hughes Stephen H., Mellors John W., Coffin John M., Van Zyl Gert U., Kearney Mary F.
BioRxiv.

New insights into homoeologous copy number variations in the hexaploid wheat genome
Juery Caroline, Concia Lorenzo, De Oliveira Romain, Papon Nathan, Ramírez‑González Ricardo, Benhamed Moussa, Uauy Cristobal, Choulet Frédéric, Paux Etienne
BioRxiv.

Global drivers of eukaryotic plankton biogeography in the sunlit ocean
Sommeria‑Klein Guilhem, Watteaux Romain, Iudicone Daniele, Bowler Chris, Morlon Hélène
BioRxiv.

A conserved choreography of mRNAs at centrosomes reveals a localization mechanism involving active polysome transport
Safieddine Adham, Coleno Emeline, Traboulsi Abdel‑Meneem, Kwon Oh Sung, Lionneton Frederic, Georget Virginie, Robert Marie‑Cécile, Gostan Thierry, Lecellier Charles, Salloum Soha, Chouaib Racha, Pichon Xavier, Le Hir Hervé, Zibara Kazem, Peter Marion, Bertrand Edouard
BioRxiv.

A stress-induced Tyrosine tRNA depletion response mediates codon-based translational repression and growth suppression
Huh Doowon, Passarelli Maria C., Gao Jenny, Dusmatova Shahnoza N, Goin Clara, Fish Lisa, Pinzaru Alexandra M., Molina Henrik, McMillan Elizabeth A., Asgharian Hosseinali, Goodarzi Hani, Tavazoie Sohail F.
BioRxiv.

Alteration of the premature tRNA landscape by gammaherpesvirus infection
Tucker Jessica, Schaller Aaron M., Willis Ian, Glaunsinger Britt A.
BioRxiv.

metabaR : an R package for the evaluation and improvement of DNA metabarcoding data quality
Zinger Lucie, Lionnet Clément, Benoiston Anne‑Sophie, Donald Julian, Mercier Céline, Boyer Frédéric
BioRxiv.

Reduced Gene Dosage of Histone H4 Prevents CENP-A Mislocalization in Saccharomyces cerevisiae
Eisenstatt Jessica R., Ohkuni Kentaro, Au Wei‑Chun, Preston Olivia, Suva Evelyn, Costanzo Michael, Boone Charles, Basrai Munira A.
BioRxiv.

Dual contributions of cerebellar-thalamic networks to learning and offline consolidation of a complex motor task
Varani Andres P, Sala Romain W, Mailhes‑Hamon Caroline, Frontera Jimena L, Léna Clément, Popa Daniela
BioRxiv.

Cis acting variation is common, can propagates across multiple regulatory layers, but is often buffered in developmental programs
Floc’hlay Swann, Wong Emily, Zhao Bingqing, Viales Rebecca R., Thomas‑Chollier Morgane, Thieffry Denis, Garfield David A., Furlong Eileen EM
BioRxiv.

Factors influencing the accuracy in dating single gene trees
Louvel Guillaume, Crollius Hugues Roest
BioRxiv.

Emergence of Non-Canonical Parvalbumin-Containing Interneurons in Hippocampus of a Murine Model of Type I Lissencephaly
Ekins Tyler G., Mahadevan Vivek, Zhang Yajun, D’Amour James A., Petros Timothy, McBain Chris J.
BioRxiv.

Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo
Floc’hlay Swann, Molina Maria Dolores, Hernandez Céline, Haillot Emmanuel, Thomas‑Chollier Morgane, Lepage Thierry, Thieffry Denis
BioRxiv.

Computational verification of large logical models – application to the prediction of T cell response to checkpoint inhibitors
Hernandez Céline, Thomas‑Chollier Morgane, Naldi Aurélien, Thieffry Denis
BioRxiv.

Human ORC/MCM density is low in active genes and correlates with replication time but does not solely define replication initiation zones
Kirstein Nina, Buschle Alexander, Wu Xia, Krebs Stefan, Blum Helmut, Hammerschmidt Wolfgang, Lacroix Laurent, Hyrien Olivier, Audit Benjamin, Schepers Aloys
BioRxiv.

The yeast ISW1b ATP-dependent chromatin remodeler is critical for nucleosome spacing and dinucleosome resolution
Eriksson Peter R., Clark David J.
BioRxiv.

Identification and characterization of phlorizin transporter from Arabidopsis thaliana and its application for phlorizin production in Saccharomyces cerevisiae
Belew Zeinu Mussa, Crocoll Christoph, Møller‑Hansen Iben, Naesby Michael, Borodina Irina, Nour‑Eldin Hussam Hassan
BioRxiv.

Independent respiratory and locomotor rhythms in running mice
Hérent Coralie, Diem Séverine, Fortin Gilles, Bouvier Julien
BioRxiv.

Morphologically constrained modeling of spinous inhibition in the somato-sensory cortex
Gemin Olivier, Serna Pablo, Assendorp Nora, Fossati Matteo, Rostaing Philippe, Triller Antoine, Charrier Cécile
BioRxiv.

Hyperprolactinemia in a male pituitary androgen receptor knockout mouse model is associated with a female-like pattern of lactotroph development
O’Hara Laura, Christian Helen C., Le Tissier Paul, Smith Lee B.
BioRxiv.

Functional Predictors of Causative Cis-Regulatory Mutations in Mendelian Disease
Bengani Hemant, Grozeva Detelina, Moyon Lambert, Bhatia Shipra, Louros Susana R, Hope Jilly, Jackson Adam, Prendergast James G, Owen Liusaidh J., Naville Magali, Rainger Jacqueline, Grimes Graeme, Halachev Mihail, Murphy Laura C, Spasic‑Boskovic Olivera, van Heyningen Veronica, Kind Peter, Abbott Catherine M, Osterweil Emily, Raymond F Lucy, Crollius Hugues Roest, FitzPatrick David R
BioRxiv.

Developing methods for measuring national distributions and densities of wild mammals using camera traps : A Kosovo study
Beatham Sarah E., Ward Alastair I., Fouracre David, Muhaxhiri Jeton, Sallmann Michael, Zogu Besim, Gjinovci Valdet, Wilsmore Anthony J., Smith Graham C.
BioRxiv.

Diversification slowdown in an evolutionary cul-de-sac
Perez‑Lamarque Benoît, Öpik Maarja, Maliet Odile, Silva Ana C. Afonso, Selosse Marc‑André, Martos Florent, Morlon Hélène
BioRxiv.

IWS1 phosphorylation promotes cell proliferation and predicts poor prognosis in EGFR mutant lung adenocarcinoma patients, through the cell cycle-regulated U2AF2 RNA splicing
Laliotis Georgios I., Chavdoula Evangelia, Paraskevopoulou Maria D., Kaba Abdul, Ferlita Alessandro La, Anastas Vollter, Orlacchio Arturo, Taraslia Vasiliki, Vlachos Ioannis, Capece Marina, Hatzigeorgiou Artemis, Palmieri Dario, Alaimo Salvatore, Tsatsanis Christos, Sehgal Lalit, Carbone David P., Coppola Vincenzo, Tsichlis Philip N.
BioRxiv.

tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast
Tavares Joana F, Davis Nick K., Poim Ana, Reis Andreia, Kellner Stefanie, Sousa Inês, Soares Ana R., Moura Gabriela M R, Dedon Peter C, Santos Manuel A S
BioRxiv.

Pregnancy data enable identification of relevant biomarkers and a partial prognosis of autism at birth
Caly Hugues, Rabiei Hamed, Coste‑Mazeau Perrine, Hantz Sebastien, Alain Sophie, Eyraud Jean‑Luc, Chianea Thierry, Caly Catherine, Makowski David, Hadjikhani Nouchine, Lemonnier Eric, Ben‑Ari Yehezkel
BioRxiv.

NCBP3 is a productive mRNP component
Dou Yuhui, Barbosa Isabelle, Jiang Hua, Iasillo Claudia, Molloy Kelly R., Schulze Wiebke Manuela, Cusack Stephen, Schmid Manfred, Le Hir Hervé, LaCava John, Jensen Torben Heick
BioRxiv.

Prior hypotheses or regularization allow inference of diversification histories from extant timetrees
Morlon Hélène, Hartig Florian, Robin Stéphane
BioRxiv.

Functional characterization of Polr3a hypomyelinating leukodystrophy mutations in the S. cerevisiae homolog, RPC160
Moir Robyn D., Lavados Christian, Lee JaeHoon, Willis Ian M.
BioRxiv.

Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states
Girbig Mathias, Misiaszek Agata D., Vorländer Matthias K., Lafita Aleix, Grötsch Helga, Baudin Florence, Bateman Alex, Müller Christoph W.
BioRxiv.

A single nucleotide change underlies the genetic assimilation of a plastic trait
Vigne Paul, Gimond Clotilde, Ferrari Céline, Vielle Anne, Hallin Johan, Pino‑Querido Ania, Mouridi Sonia El, Frøkjær‑Jensen Christian, Boulin Thomas, Teotónio Henrique, Braendle Christian
BioRxiv.

Organization of DNA replication origin firing in Xenopus egg extracts : the role of intra-S checkpoint
Ciardo Diletta, Haccard Olivier, Narassimprakash Hemalatha, Arbona Jean‑Michel, Hyrien Olivier, Audit Benjamin, Marheineke Kathrin, Goldar Arach
BioRxiv.

Ecogenomics of key prokaryotes in the arctic ocean
Royo‑Llonch Marta, Sánchez Pablo, Ruiz‑González Clara, Salazar Guillem, Pedrós‑Alió Carlos, Labadie Karine, Paoli Lucas, Chaffron Samuel, Eveillard Damien, Karsenti Eric, Sunagawa Shinichi, Wincker Patrick, Karp‑Boss Lee, Bowler Chris, Acinas Silvia G
BioRxiv.

NMDAR-mediated transcriptional control of gene expression in the specification of interneuron subtype identity
Mahadevan Vivek, Mitra Apratim, Zhang Yajun, Peltekian Areg, Chittajallu Ramesh, Esnault Caraoline, Maric Dragan, Rhodes Christopher, Pelkey Kenneth A., Dale Ryan, Petros Timothy J., McBain Chris J.
BioRxiv.

Chromatin memory generated by cohesin-like interaction at looping sites : modeling an hypothesis
Papale Andrea, Holcman David
BioRxiv.

Dynamic Functional Connectivity between Order and Randomness and its Evolution across the Human Adult Lifespan
Battaglia Demian, Boudou Thomas, Hansen Enrique C. A., Lombardo Diego, Chettouf Sabrina, Daffertshofer Andreas, McIntosh Anthony R., Zimmermann Joelle, Ritter Petra, Jirsa Viktor
BioRxiv.

Synchronization, stochasticity and phase waves in neuronal networks with spatially-structured connectivity
Kulkarni Anirudh, Ranft Jonas, Hakim Vincent
BioRxiv.

The impact of transposable elements on tomato diversity
Domínguez Marisol, Dugas Elise, Benchouaia Médine, Leduque Basile, Jimenez‑Gomez José, Colot Vincent, Quadrana Leandro
BioRxiv.

Altering Polycomb Repressive Complex 2 activity partially suppresses ddm1 mutant phenotypes in Arabidopsis
Rougée Martin, Quadrana Leandro, Zervudacki Jérôme, Colot Vincent, Navarro Lionel, Deleris Angélique
BioRxiv.

The Genomic Loci of Specific Human tRNA Genes Exhibit Ageing-Related DNA Hypermethylation
Acton Richard J., Yuan Wei, Gao Fei, Xia Yudong, Bourne Emma, Wozniak Eva, Bell Jordana, Lillycrop Karen, Wang Jun, Dennison Elaine, Harvey Nicholas, Mein Charles A., Spector Tim D., Hysi Pirro G., Cooper Cyrus, Bell Christopher G.
BioRxiv.

UPMaBoSS : a novel framework for dynamic cell population modeling
Stoll Gautier, Naldi Aurélien, Noël Vincent, Viara Eric, Barillot Emmanuel, Kroemer Guido, Thieffry Denis, Calzone Laurence
BioRxiv.

A minimally disruptive method for measuring water potential in-planta using hydrogel nanoreporters
Jain Piyush, Liu Weizhen, Zhu Siyu, Melkonian Jeff, Pauli Duke, Riha Susan Jean, Gore Michael A., Stroock Abraham D.
BioRxiv.

Callose deposition is essential for the completion of cytokinesis in the unicellular alga, Penium margaritaceum
Davis Destiny J., Wang Minmin, Sørensen Iben, Rose Jocelyn K.C., Domozych David S., Drakakaki Georgia
BioRxiv.

Hypomodified tRNA in evolutionarily distant yeasts can trigger rapid tRNA decay to activate the general amino acid control response, but with different consequences
De Zoysa Thareendra, Phizicky Eric M.
BioRxiv.

One enzyme many faces : alkaline phosphatase-based phosphorus-nutrient strategies and the regulatory cascade revealed by CRISPR/Cas9 gene knockout
Zhang Kaidian, Zhou Zhi, Wang Jierui, Li Jiashun, Lin Xin, Li Ling, Wu Xiaomei, You Yanchun, Lin Senjie
BioRxiv.

Altered Capicua expression drives regional Purkinje neuron vulnerability through ion channel gene dysregulation in Spinocerebellar ataxia type 1
Chopra Ravi, Bushart David D, Cooper John P, Yellajoshyula Dhananjay, Morrison Logan M, Huang Haoran, Scoles Daniel R, Pulst Stefan M, Orr Harry T, Shakkottai Vikram G
BioRxiv.

A localization screen reveals translation factories and widespread co-translational RNA targeting
Chouaib Racha, Safieddine Adham, Pichon Xavier, Imbert Arthur, Kwon Oh Sung, Samacoits Aubin, Traboulsi Abdel‑Meneem, Robert Marie‑Cécile, Tsanov Nikolay, Coleno Emeline, Poser Ina, Zimmer Christophe, Hyman Anthony, Hir Hervé Le, Zibara Kazem, Peter Marion, Mueller Florian, Walter Thomas, Bertrand Edouard
BioRxiv.

OTTER, a new method quantifying absolute amounts of tRNAs
Nagai Akihisa, Mori Kohei, Shiomi Yuma, Yoshihisa Tohru
BioRxiv.

Evolutionary Changes in Left-Right Visceral Asymmetry in Astyanax Cavefish
Ma Li, Ng Mandy, Shi Janet, Gore Aniket V., Castranova Daniel, Weinstein Brant M., Jeffery William R.
BioRxiv.

Live Imaging of Intracranial Lymphatics in the Zebrafish
Castranova Daniel, Samasa Bakary, Galanternik Marina Venero, Jung Hyun Min, Pham Van N., Weinstein Brant M.
BioRxiv.

Visualizing the dynamics of exported bacterial proteins with the chemogenetic fluorescent reporter FAST
Chekli Yankel, Peron‑Cane Caroline, Dell’Arciprete Dario, Allemand Jean‑François, Li Chenge, Ghigo Jean‑Marc, Gautier Arnaud, Lebreton Alice, Desprat Nicolas, Beloin Christophe
BioRxiv.

In-depth characterization of layer 5 output neurons of the primary somatosensory cortex innervating the mouse dorsal spinal cord
Frezel N., Platonova E., Voigt F.F., Mateos J.M., Kastli R., Ziegler U., Karayannis T., Helmchen F., Wildner H., Zeilhofer H.U.
BioRxiv.

Allochronic Divergence Driven by Spatial Asynchrony in Precipitation in Neotropical Frogs ?
Guarnizo Carlos E., Montoya Paola, Quintero Ignacio, Cadena Carlos Daniel
BioRxiv.

Kingdom-wide analysis of the evolution of the plant type III polyketide synthase superfamily
Naake Thomas, Maeda Hiroshi A., Proost Sebastian, Tohge Takayuki, Fernie Alisdair R.
BioRxiv.

Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity
Doulcier Guilhem, Lambert Amaury, De Monte Silvia, Rainey Paul B.
BioRxiv.

FORK-seq : replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Hennion Magali, Arbona Jean‑Michel, Lacroix Laurent, Cruaud Corinne, Theulot Bertrand, Tallec Benoît Le, Proux Florence, Wu Xia, Novikova Elizaveta, Engelen Stefan, Lemainque Arnaud, Audit Benjamin, Hyrien Olivier
BioRxiv.

Testing the ‘caves as islands’ model in two cave-obligate invertebrates with a genomic approach
Balogh Andras, Ngo Lam, Zigler Kirk S., Dixon Groves
BioRxiv.

Genetic tool development in marine protists : Emerging model organisms for experimental cell biology
Faktorová Drahomíra, Nisbet R. Ellen R., Robledo José A. Fernández, Casacuberta Elena, Sudek Lisa, Allen Andrew E., Ares Manuel, Aresté Cristina, Balestreri Cecilia, Barbrook Adrian C., Beardslee Patrick, Bender Sara, Booth David S., Bouget François‑Yves, Bowler Chris, Breglia Susana A., Brownlee Colin, Burger Gertraud, Cerutti Heriberto, Cesaroni Rachele, Chiurillo Miguel A., Clemente Thomas, Coles Duncan B., Collier Jackie L., Cooney Elizabeth C., Coyne Kathryn, Docampo Roberto, Dupont Christopher L., Edgcomb Virginia, Einarsson Elin, Elustondo Pía A., Federici Fernan, Freire‑Beneitez Veronica, Freyria Nastasia J., Fukuda Kodai, García Paulo A., Girguis Peter R., Gomaa Fatma, Gornik Sebastian G., Guo Jian, Hampl Vladimír, Hanawa Yutaka, Haro‑Contreras Esteban R., Hehenberger Elisabeth, Highfield Andrea, Hirakawa Yoshihisa, Hopes Amanda, Howe Christopher J., Hu Ian, Ibañez Jorge, Irwin Nicholas A.T., Ishii Yuu, Janowicz Natalia Ewa, Jones Adam C., Kachale Ambar, Fujimura‑Kamada Konomi, Kaur Binnypreet, Kaye Jonathan Z., Kazana Eleanna, Keeling Patrick J., King Nicole, Klobutcher Lawrence A., Lander Noelia, Lassadi Imen, Li Zhuhong, Lin Senjie, Lozano Jean‑Claude, Luan Fulei, Maruyama Shinichiro, Matute Tamara, Miceli Cristina, Minagawa Jun, Moosburner Mark, Najle Sebastián R., Nanjappa Deepak, Nimmo Isabel C., Noble Luke, Vanclová Anna M.G. Novák, Nowacki Mariusz, Nuñez Isaac, Pain Arnab, Piersanti Angela, Pucciarelli Sandra, Pyrih Jan, Rest Joshua S., Rius Mariana, Robertson Deborah, Ruaud Albane, Ruiz‑Trillo Iñaki, Sigg Monika A., Silver Pamela A., Slamovits Claudio H., Smith G. Jason, Sprecher Brittany N., Stern Rowena, Swart Estienne C., Tsaousis Anastasios D., Tsypin Lev, Turkewitz Aaron, Turnšek Jernej, Valach Matus, Vergé Valérie, von Dassow Peter, von der Haar Tobias, Waller Ross F., Wang Lu, Wen Xiaoxue, Wheeler Glen, Woods April, Zhang Huan, Mock Thomas, Worden Alexandra Z., Lukeš Julius
BioRxiv.

A far-red fluorescent chemogenetic reporter for in vivo molecular imaging
Li Chenge, Tebo Alison G., Thauvin Marion, Plamont Marie‑Aude, Volovitch Michel, Morin Xavier, Vriz Sophie, Gautier Arnaud
BioRxiv.

Detecting genetic variation and base modifications together in the same single molecules of DNA and RNA at base pair resolution using a magnetic tweezer platform
Wang Zhen, Maluenda Jérôme, Giraut Laurène, Vieille Thibault, Lefevre Andréas, Salthouse David, Radou Gaël, Moulinas Rémi, Astete‑Morales Sandra, d’Avezac Pol, Smith Geoff, André Charles, Allemand Jean‑François, Bensimon David, Croquette Vincent, Ouellet Jimmy, Hamilton Gordon
BioRxiv.

Caenorhabditis elegans dauers vary recovery in response to bacteria from natural habitat
Bubrig Louis T., Sutton John M., Fierst Janna L.
BioRxiv.

Potential role of the X circular code in the regulation of gene expression
Thompson Julie D., Ripp Raymond, Mayer Claudine, Poch Olivier, Michel Christian J.
BioRxiv.

The RSC complex remodels nucleosomes in transcribed coding sequences and promotes transcription in Saccharomyces cerevisiae
Biernat Emily, Kinney Jeena, Dunlap Kyle, Rizza Christian, Govind Chhabi K.
BioRxiv.

Ruler elements in chromatin remodelers set nucleosome array spacing and phasing
Oberbeckmann Elisa, Niebauer Vanessa, Watanabe Shinya, Farnung Lucas, Moldt Manuela, Schmid Andrea, Cramer Patrick, Peterson Craig L., Eustermann Sebastian, Hopfner Karl‑Peter, Korber Philipp
BioRxiv.

Rerouting of ribosomal proteins into splicing in plant organelles
Wang Chuande, Fourdin Rachel, Quadrado Martine, Dargel‑Graffin Céline, Tolleter Dimitri, Macherel David, Mireau Hakim
BioRxiv.

Repeated colonization of caves leads to phenotypic convergence in catfishes (Siluriformes : Trichomycterus) at a small geographical scale
Flórez Juan Sebastián, Cadena Carlos Daniel, DoNascimiento Carlos, Torres Mauricio
BioRxiv.

Conserved small nucleotidic elements at the origin of concerted piRNA biogenesis from genes and lncRNAs
Jensen Silke, Brasset Emilie, Parey Elise, Roest‑Crollius Hugues, Sharakhov Igor V., Vaury Chantal
BioRxiv.

Testing the adaptive value of sporulation in budding yeast using experimental evolution
Thomasson Kelly M., Franks Alexander, Teotónio Henrique, Proulx Stephen R.
BioRxiv.

Bidirectional control of fear memories by the cerebellum through the ventrolateral periaqueductal grey
Frontera Jimena L., Aissa Hind Baba, Sala Romain William, Mailhes‑Hamon Caroline, Georgescu Ioana Antoaneta, Léna Clément, Popa Daniela
BioRxiv.

Functional abnormalities in the cerebello-thalamic pathways in an animal model of dystonia
Margarint Elena Laura, Aïssa Hind Baba, Varani Andrés Pablo, Sala Romain, Menardy Fabien, Pelosi Assunta, Hervé Denis, Léna Clément, Popa Daniela
BioRxiv.

Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications
Parey Elise, Louis Alexandra, Cabau Cédric, Guiguen Yann, Crollius Hugues Roest, Berthelot Camille
BioRxiv.

Low ribosomal RNA genes copy number provoke genomic instability and chromosomal segment duplication events that modify global gene expression and plant-pathogen response
Picart‑Picolo Ariadna, Grob Stefan, Picault Nathalie, Franek Michal, halter Thierry, Maier Tom R., Llauro Christel, Jobet Edouard, Zhang Panpan, Vijayapalani Paramasivan, Baum Thomas J., Navarro Lionel, Dvorackova Martina, Mirouze Marie, Pontvianne Frederic
BioRxiv.

Local translation in perisynaptic astrocytic processes is specific and regulated by fear conditioning
Mazaré Noémie, Oudart Marc, Moulard Julien, Cheung Giselle, Tortuyaux Romain, Mailly Philippe, Mazaud David, Bemelmans Alexis‑Pierre, Boulay Anne‑Cécile, Blugeon Corinne, Jourdren Laurent, Le Crom Stéphane, Rouach Nathalie, Cohen‑Salmon Martine
BioRxiv.

Non-essential function of KRAB zinc finger gene clusters in retrotransposon suppression
Wolf Gernot, de Iaco Alberto, Sun Ming‑An, Bruno Melania, Tinkham Matthew, Hoang Don, Mitra Apratim, Ralls Sherry, Trono Didier, Macfarlan Todd S.
BioRxiv.

Akt/Foxo pathway activation switches apoptosis to senescence in short telomere zebrafish
El‑Maï Mounir, Marzullo Marta, de Castro Inês Pimenta, Ferreira Miguel Godinho
BioRxiv.

Engineering E. coli for magnetic control and the spatial localization of functions
Aubry Mary, Wang Wei‑An, Guyodo Yohan, Delacou Eugénia, Guignier Jean Michel, Espeli Olivier, Lebreton Alice, Guyot François, Gueroui Zoher
BioRxiv.

Lifetime of a structure evolving by cluster aggregation and particle loss, and application to postsynaptic scaffold domains
Hakim Vincent, Ranft Jonas
BioRxiv.

H3K27me3 natural variation selectively marks genes predicted to be important for differentiation in unicellular algae
Zhao Xue, Rastogi Achal, Deton Cabanillas Anne Flore, Mohamed Ouardia Ait, Cantrel Catherine, Lombard Berangère, Murik Omer, Genovesio Auguste, Bowler Chris, Bouyer Daniel, Loew Damarys, Lin Xin, Veluchamy Alaguraj, Jimenez Vieira Fabio Rocha, Tirichine Leila
BioRxiv.

The Ty1 integrase nuclear localization signal is necessary and sufficient for retrotransposon targeting to tRNA genes
Asif‑Laidin Amna, Conesa Christine, Bonnet Amandine, Grison Camille, Adhya Indranil, Menouni Rachid, Fayol Hélène, Palmic Noé, Acker Joël, Lesage Pascale
BioRxiv.

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Richter Daniel J., Watteaux Romain, Vannier Thomas, Leconte Jade, Frémont Paul, Reygondeau Gabriel, Maillet Nicolas, Henry Nicolas, Benoit Gaëtan, Fernàndez‑Guerra Antonio, Suweis Samir, Narci Romain, Berney Cédric, Eveillard Damien, Gavory Frederick, Guidi Lionel, Labadie Karine, Mahieu Eric, Poulain Julie, Romac Sarah, Roux Simon, Dimier Céline, Kandels Stefanie, Picheral Marc, Searson Sarah, Pesant Stéphane, Aury Jean‑Marc, Brum Jennifer R., Lemaitre Claire, Pelletier Eric, Bork Peer, Sunagawa Shinichi, Karp‑Boss Lee, Bowler Chris, Sullivan Matthew B., Karsenti Eric, Mariadassou Mahendra, Probert Ian, Peterlongo Pierre, Wincker Patrick, de Vargas Colomban, Ribera d’Alcalà Maurizio, Iudicone Daniele, Jaillon Olivier
BioRxiv.

Glial cell mechanosensitivity is reversed by adhesion cues
Tomba C., Migdal C., Fuard D., Villard C., Nicolas A.
BioRxiv.

Plant Small RNA Species Direct Gene Silencing in Pathogenic Bacteria as well as Disease Protection
Singla‑Rastogi Meenu, Charvin Magali, Thiébeauld Odon, Perez‑Quintero Alvaro L, Ravet Antinéa, Emidio‑Fortunato Antonio, Mendu Venugopal, Navarro Lionel
BioRxiv.

SUSD4 Controls Activity-Dependent Degradation of AMPA Receptor GLUA2 and Synaptic Plasticity
González‑Calvo I., Iyer K., Carquin M., Khayachi A., Giuliani F.A., Vincent J., Séveno M., Sigoillot S.M., Veleanu M., Tahraoui S., Albert M., Vigy O., Nadjar Y., Dumoulin A., Triller A., Bessereau J.‑L., Rondi‑Reig L., Isope P., Selimi F.
BioRxiv.

Model-based inference of punctuated molecular evolution
Manceau Marc, Marin Julie, Morlon Hélène, Lambert Amaury
BioRxiv.

Feasibility analysis of semiconductor voltage nanosensors for neuronal membrane potential sensing
Ludwig Anastasia, Serna Pablo, Morgenstein Lion, Yang Gaoling, Bar‑Elli Omri, Ortiz Gloria, Miller Evan, Oron Dan, Grupi Asaf, Weiss Shimon, Triller Antoine
BioRxiv.

Aire-dependent genes undergo Clp1-mediated 3’UTR shortening associated with higher transcript stability in the thymus
Guyon Clotilde, Jmari Nada, Padonou Francine, Li Yen‑Chin, Ucar Olga, Fujikado Noriyuki, Coulpier Fanny, Blanchet Christophe, Root David E., Giraud Matthieu
BioRxiv.

The Genome of the Charophyte Alga Penium margaritaceum Bears Footprints of the Evolutionary Origins of Land Plants
Jiao Chen, Sørensen Iben, Sun Xuepeng, Sun Honghe, Behar Hila, Alseekh Saleh, Philippe Glenn, Lopez Kattia Palacio, Sun Li, Reed Reagan, Jeon Susan, Kiyonami Reiko, Zhang Sheng, Fernie Alisdair R., Brumer Harry, Domozych David S., Fei Zhangjun, Rose Jocelyn K. C.
BioRxiv.

Cavefish brain atlases reveal functional and anatomical convergence across independently evolved populations
Jaggard James, Lloyd Evan, Yuiska Anders, Patch Adam, Fily Yaouen, Kowalko Johanna E., Appelbaum Lior, Duboue Erik R., Keene Alex C.
BioRxiv.

Topoisomerase VI participates in an insulator-like function that prevents H3K9me2 spreading into euchromatic islands
Méteignier Louis‑Valentin, Lecampion Cécile, Velay Florent, Vriet Cécile, Dimnet Laura, Térèse Michel, Rougée Martin, Breuer Christian, Soubigou‑Taconnat Ludivine, Sugimoto Keiko, Barneche Fredy, Laloi Christophe
BioRxiv.

Suppressor mutations in Mecp2-null mice reveal that the DNA damage response is key to Rett syndrome pathology
Enikanolaiye Adebola, Ruston Julie, Zeng Rong, Taylor Christine, Shrock Marijke, Buchovecky Christie M., Shendure Jay, Acar Elif, Justice Monica J.
BioRxiv.

Modelling Niemann-Pick disease type C in a human haploid cell line allows for patient variant characterization and clinical interpretation
Erwood Steven, Brewer Reid A., Bily Teija M.I., Maino Eleonora, Zhou Liangchi, Cohn Ronald D., Ivakine Evgueni A.
BioRxiv.

Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification
Warren Jessica M., Salinas‑Giegé Thalia, Hummel Guillaume, Coots Nicole L., Svendsen Joshua M., Brown Kristen C., Maréchal‑Drouard Laurence, Sloan Daniel B.
BioRxiv.

longfin causes cis-ectopic expression of the kcnh2a ether-a-go-go K+ channel to autonomously prolong fin outgrowth
Stewart Scott, Le Bleu Heather K., Yette Gabriel A., Henner Astra L., Braunstein Joshua A., Stankunas Kryn
BioRxiv.

Genetic architecture underlying changes in carotenoid accumulation during the evolution of the Blind Mexican cavefish, Astyanax mexicanus
Riddle Misty R., Aspiras Ariel, Damen Fleur, Hutchinson John N., Chinnapen Daniel, Tabin Clifford J.
BioRxiv.

Loss of NPC1 enhances phagocytic uptake and impairs lipid trafficking in microglia
Colombo Alessio, Dinkel Lina, Müller Stephan A., Monasor Laura Sebastian, Schifferer Martina, Cantuti‑Castelvetri Ludovico, König Jasmin, Vidatic Lea, Bremova‑Ertl Tatiana, Hecimovic Silva, Simons Mikael, Lichtenthaler Stefan F., Strupp Michael, Schneider Susanne A., Tahirovic Sabina
BioRxiv.

Defective excitatory/inhibitory synaptic balance and increased neuron apoptosis in a zebrafish model of Dravet syndrome
Brenet Alexandre, Hassan‑Abdi Rahma, Somkhit Julie, Yanicostas Constantin, Soussi‑Yanicostas Nadia
BioRxiv.

Translational efficiency across healthy and tumor tissues is proliferation-related
Hernandez‑Alias Xavier, Benisty Hannah, Schaefer Martin H., Serrano Luis
BioRxiv.

Inducible degron-dependent depletion of the RNA polymerase I associated factor PAF53 demonstrates it is essential for cell growth and allows for the analysis of functional domains
McNamar Rachel, Abu‑Adas Zakaria, Rothblum Katrina, Rothblum Lawrence I.
BioRxiv.

Active transcription regulates ORC/MCM distribution whereas replication timing correlates with ORC density in human cells
Kirstein Nina, Buschle Alexander, Wu Xia, Krebs Stefan, Blum Helmut, Hammerschmidt Wolfgang, Hyrien Olivier, Audit Benjamin, Schepers Aloys
BioRxiv.

A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis
Coscia Fabian, Doll Sophia, Bech Jacob Mathias, Mund Andreas, Lengyel Ernst, Lindebjerg Jan, Madsen Gunvor Iben, Moreira José M. A., Mann Matthias
BioRxiv.

Natural Epiallelic Variation is Associated with Quantitative Resistance to the Pathogen Plasmodiophora Brassicae
Liégard Benjamin, Gravot Antoine, Quadrana Leandro, Aigu Yoann, Bénéjam Juliette, Lariagon Christine, Lemoine Jocelyne, Colot Vincent, Manzanares‑Dauleux Maria J., Jubault Mélanie
BioRxiv.

Coordination of transcriptional and translational regulations in human epithelial cells infected by Listeria monocytogenes
Besic Vinko, Habibolahi Fatemeh, Noël Benoît, Rupp Sebastian, Genovesio Auguste, Lebreton Alice
BioRxiv.

Gain modulation and odor concentration invariance in early olfactory networks
Marachlian Emiliano, Huerta Ramon, Locatelli Fernando F.
BioRxiv.

Phenotypic plasticity as a mechanism of cave colonization and adaptation
Bilandžija Helena, Hollifield Breanna, Steck Mireille, Meng Guanliang, Ng Mandy, Koch Andrew D., Gračan Romana, Ćetković Helena, Porter Megan L., Renner Kenneth J., Jeffery William R.
BioRxiv.

Cheating emergences in the arbuscular mycorrhizal mutualism : a network and phylogenetic analysis
Perez‑Lamarque Benoît, Selosse Marc‑André, Öpik Maarja, Morlon Hélène, Martos Florent
BioRxiv.

Post-replicative pairing of sister ter regions in Escherichia coli involves multiple activities of MatP
Crozat Estelle, Tardin Catherine, Salhi Maya, Rousseau Philippe, Lablaine Armand, Bertoni Tommaso, Holcman David, Sclavi Bianca, Cicuta Pietro, Cornet François
BioRxiv.

Disruption to NKCC1 impairs the response of myelinating Schwann cells to neuronal activity and leads to severe peripheral nerve pathology
Kegel Linde, Marshall‑Phelps Katy LH, Baraban Marion, Almeida Rafael G, Rubio‑Brotons Maria, Klingseisen Anna, Benito‑Kwiecinski Silvia, Early Jason J, Bin Jenea, Livesey Matthew R, Poole Richard J, Lyons David A
BioRxiv.

METTL2 forms a complex with the DALRD3 anticodon-domain binding protein to catalyze formation of 3-methylcytosine in specific arginine tRNA isoacceptors
Lentini Jenna M., Fu Dragony
BioRxiv.

A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum
Rastogi Achal, Vieira FRJ, Deton‑Cabanillas Anne‑Flore, Veluchamy Alaguraj, Cantrel Catherine, Wang Gaohong, Vanormelingen Pieter, Bowler Chris, Piganeau Gwenael, Hu Hanhua, Tirichine Leila
BioRxiv.

TPR is required for the nuclear export of mRNAs and lncRNAs from intronless and intron-poor genes
Lee Eliza S., Wolf Eric J., Smith Harrison W., Emili Andrew, Palazzo Alexander F.
BioRxiv.

Chemotaxis and topotaxis add vectorially for amoeboid cell migration
Wondergem Joeri A. J., Mytiliniou Maria, Wit Falko C. H. de, Reuvers Thom G. A., Holcman David, Heinrich Doris
BioRxiv.

An altered metabolism could contribute to the low activation of neonatal CD8+T cells
Antonio Sánchez‑Villanueva José, Otoniel Rodríguez‑Jorge, Oscar Ramírez‑Pliego, Gabriela Rosas Salgado, Wassim Abou‑Jaoudé, Céline Hernandez, Aurélien Naldi, Denis Thieffry, Angélica Santana María
BioRxiv.

SIRT6 as a transcriptional coactivator of GATA4 prevents doxorubicin cardiotoxicity independently of its deacylase activity
Qian Minxian, Peng Linyuan, Liu Zuojun, Tang Xiaolong, Wang Zimei, Liu Baohua
BioRxiv.

Microbial evolution reshapes soil carbon feedbacks to climate change
Abs Elsa, Saleska Scott R., Ferriere Regis
BioRxiv.

Targeting of mitochondrial and cytosolic substrates of tRNA isopentenyltransferases : selection of differential tRNA-i6A37 identity subsets
Khalique Abdul, Mattijssen Sandy, Haddad Alexander F., Maraia Richard J.
BioRxiv.

Development of vascular myogenic responses in zebrafish
Bahrami Nabila, Childs Sarah J.
BioRxiv.

The laboratory domestication of zebrafish : from diverse populations to inbred substrains
Suurväli Jaanus, Whiteley Andrew R, Zheng Yichen, Gharbi Karim, Leptin Maria, Wiehe Thomas
BioRxiv.

Functional community assembly and turnover along elevation and latitude
Jarzyna Marta A., Quintero Ignacio, Jetz Walter
BioRxiv.

Diatoms structure the plankton community based on selective segregation in the world’s ocean
Vincent Flora, Bowler Chris
BioRxiv.

Intraspecific diversity of fission yeast mitochondrial genomes
Tao Yu‑Tian, Suo Fang, Tusso Sergio, Wang Yan‑Kai, Huang Song, Wolf Jochen B. W., Du Li‑Lin
BioRxiv.

An HSP90-regulated reduced-eye phenotype in Tribolium shows fitness benefits and thus provides evidence for evolutionary capacitance
Aboelsoud Rasha, Kurtz Joachim
BioRxiv.

Meningeal lymphatic endothelial cells fulfill scavenger endothelial cell function and employ Mrc1a for cargo uptake
Padberg Yvonne, van Impel Andreas, van Lessen Max, Bussmann Jeroen, Schulte‑Merker Stefan
BioRxiv.

Distinct Basket Nucleoporins roles in Nuclear Pore Function and Gene Expression : Tpr is an integral component of the TREX-2 mRNA export pathway
Aksenova Vasilisa, Lee Hang Noh, Smith Alexandra, Chen Shane, Bhat Prasanna, Iben James, Echeverria Carlos, Fontoura Beatriz, Arnaoutov Alexei, Dasso Mary
BioRxiv.

GC content shapes mRNA decay and storage in human cells
Courel Maïté, Clément Yves, Foretek Dominika, Cruchez Olivia Vidal, Yi Zhou, Benassy Marie‑Noëlle, Kress Michel, Vindry Caroline, Bénard Marianne, Bossevain Clémentine, Antoniewski Christophe, Morillon Antonin, Brest Patrick, Hubstenberger Arnaud, Crollius Hugues Roest, Standart Nancy, Weil Dominique
BioRxiv.

Biphasic impact of prenatal inflammation and macrophage depletion on the wiring of neocortical inhibitory circuits
Thion Morgane Sonia, Mosser Coralie‑Anne, Férézou Isabelle, Grisel Pauline, Baptista Sofia, Low Donovan, Ginhoux Florent, Garel Sonia, Audinat Etienne
BioRxiv.

Synaptic mechanisms underlying the network state-dependent recruitment of VIP-expressing interneuron-specific interneurons in the CA1 hippocampus
Luo Xiao, Guet‑McCreight Alexandre, Villette Vincent, Francavilla Ruggiero, Marino Beatrice, Chamberland Simon, Skinner Frances K, Topolnik Lisa
BioRxiv.

Synchronization of mammalian motile cilia in the brain with hydrodynamic forces
Pellicciotta Nicola, Hamilton Evelyn, Kotar Jurij, Faucourt Marion, Degehyr Nathalie, Spassky Nathalie, Cicuta Pietro
BioRxiv.

Characterizing and comparing phylogenetic trait data from their normalized Laplacian spectrum
Lewitus Eric, Aristide Leandro, Morlon Helene
BioRxiv.

DNA sequence is a major determinant of tetrasome dynamics
Ordu O., Lusser A., Dekker N. H.
BioRxiv.

2dSS : a web server for protein secondary structure visualization
Lotun Diksha Priya, Cochard Charlotte, Vieira Fabio R.J, Bernardes Juliana Silva
BioRxiv.

Reconstructing wells from high density regions extracted from super-resolution single particle trajectories
Parutto P., Heck J., Heine M., Holcman D.
BioRxiv.

DNA accessibility is not the primary determinant of chromatin-mediated gene regulation
Chereji Răzvan V., Eriksson Peter R., Ocampo Josefina, Clark David J.
BioRxiv.

RSAT Var-tools : an accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding
Santana‑Garcia Walter, Rocha‑Acevedo Maria, Ramirez‑Navarro Lucia, Mbouamboua Yvon, Thieffry Denis, Thomas‑Chollier Morgane, Contreras‑Moreira Bruno, van Helden Jacques, Medina‑Rivera Alejandra
BioRxiv.

Cell-type specific concentration regulation of the basal transcription factor TFIIH
Donnio Lise‑Marie, Miquel Catherine, Vermeulen Wim, Giglia‑Mari Giuseppina, Mari Pierre‑Olivier
BioRxiv.

Reliable Phylogenetic Regressions for Multivariate Comparative Data : Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats
Clavel Julien, Morlon Hélène
BioRxiv.

Noda-like RNA viruses infecting Caenorhabditis nematodes : sympatry, diversity and reassortment
Frézal Lise, Jung Hyeim, Tahan Stephen, Wang David, Félix Marie‑Anne
BioRxiv.

Suppression of transcytosis regulates zebrafish blood-brain barrier development
O’Brown Natasha M., Megason Sean G., Gu Chenghua
BioRxiv.

Opposing chromatin remodelers control transcription initiation frequency and start site selection
Kubik Slawomir, Challal Drice, Bruzzone Maria Jessica, Dreos René, Mattarocci Stefano, Bucher Philipp, Libri Domenico, Shore David
BioRxiv.

Gene-level quantitative trait mapping in an expanded C. elegans multiparent experimental evolution panel
Noble Luke M., Rockman Matthew V., Teotónio Henrique
BioRxiv.

Characterization of pathology-inducing α-synuclein species from human diseased brain tissue
Graef John D., Hoque Nina, Polson Craig, Yang Ling, Iben Lawrence, Cao Yang, Devidze Nino, Ahlijanian Michael K., Meredith Jere E.
BioRxiv.

Estimating Diversity Through Time using Molecular Phylogenies : Old and Species-Poor Frog Families are the Remnants of a Diverse Past
Billaud O., Moen D. S., Parsons T. L., Morion H.
BioRxiv.

Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in histone H3 Lys-4 trimethylation independently from histone H2B monoubiquitination
Fiorucci Anne‑Sophie, Bourbousse Clara, Concia Lorenzo, Rougée Martin, Deton‑Cabanillas Anne‑Flore, Zabulon Gérald, Layat Elodie, Latrasse David, Kim SoonKap, Chaumont Nicole, Lombard Bérangère, Stroebel David, Lemoine Sophie, Mohammad Ammara, Blugeon Corinne, Loew Damarys, Bailly Christophe, Bowler Chris, Benhamed Moussa, Barneche Fredy
BioRxiv.

An RNA-binding protein secreted by Listeria monocytogenes activates RIG-I signaling
Pagliuso Alessandro, Tham To Nam, Allemand Eric, Robertin Stevens, Dupuy Bruno, Bertrand Quentin, Bécavin Christophe, Koutero Mikael, Najburg Valérie, Nahori Marie‑Anne, Stavru Fabrizia, Dessen Andréa, Muchard Christian, Lebreton Alice, Komarova Anastassia V., Cossart Pascale
BioRxiv.

Non-coding AUG circRNAs constitute an abundant and conserved subclass of circles
Stagsted Lotte VW, Nielsen Katrine M, Daugaard Iben, Hansen Thomas B
BioRxiv.

An open-source and low-cost feeding system for zebrafish facilities
Tangara Astou, Paresys Gérard, Bouallague Firas, Cabirou Yvon, Fodor Jozsua, Llobet Victor, Sumbre Germán
BioRxiv.

Sen1 is required for RNA Polymerase III transcription termination in an R-loop independent manner
Rivosecchi Julieta, Larochelle Marc, Teste Camille, Grenier Frédéric, Malapert Amélie, Ricci Emiliano P., Bernard Pascal, Bachand François, Vanoosthuyse Vincent
BioRxiv.

Universal trends of post-duplication evolution revealed by the genomes of 13 Paramecium species sharing an ancestral whole-genome duplication
Gout Jean‑Francois, Johri Parul, Arnaiz Olivier, Doak Thomas G., Bhullar Simran, Couloux Arnaud, Guérin Fréderic, Malinsky Sophie, Sperling Linda, Labadie Karine, Meyer Eric, Duharcourt Sandra, Lynch Michael
BioRxiv.

Interdependent Phenotypic and Biogeographic Evolution Driven by Biotic Interactions
Quintero Ignacio, Landis Michael J.
BioRxiv.

RASSF1A is required for the maintenance of nuclear actin levels
Chatzifrangkeskou Maria, Pefani Dafni‑Eleftheria, Eyres Michael, Vendrell Iolanda, Fischer Roman, Pankova Daniela, O’Neill Eric
BioRxiv.

An unusual nucleosomal sequence pattern is enriched in mammalian genes
Wright Gregory M., Cui Feng
BioRxiv.

Blood vessels guide Schwann cell migration in the adult demyelinated CNS through Eph/ephrin signaling
Garcia‑Diaz Beatriz, Bachelin Corinne, Coulpier Fanny, Gerschenfeld Gaspard, Deboux Cyrille, Zujovic Violetta, Charnay Patrick, Topilko Piotr, Evercooren Anne Baron‑Van
BioRxiv.

Evolution of the D. melanogaster chromatin landscape and its associated proteins
Parey Elise, Crombach Anton
BioRxiv.

From individuals to populations : How intraspecific competition shapes thermal reaction norms
Mallard François, Bourlot Vincent Le, Coeur Christie Le, Avnaim Monique, Péronnet Romain, Claessen David, Tully Thomas
BioRxiv.

The Largest Subunit of Human TFIIIC Complex, TFIIIC220, a Lysine Acetyltransferase Targets Histone H3K18
Basu Moumita, Boopathi Ramachandran, Das Sadhan, Kundu Tapas K
BioRxiv.

Dynamics of centriole amplification in centrosome-depleted brain multiciliated progenitors
Mercey Olivier, Jord Adel Al, Rostaing Philippe, Mahuzier Alexia, Fortoul Aurélien, Boudjema Amélie‑Rose, Faucourt Marion, Spassky Nathalie, Meunier Alice
BioRxiv.

Genome wide screen reveals a specific interaction between autosome and X that is essential for hybrid male sterility
Bi Yu, Ren Xiaoliang, Li Runsheng, Ding Qiutao, Xie Dongying, Zhao Zhongying
BioRxiv.

Mapping the bacterial ecology on the phyllosphere of grass hay and the potential hazards of soaking fodder for horse gut health
Moore‑Colyer Meriel JS, Longland Annette, Harris Patricia, Crosthwaite Susan
BioRxiv.

Codon usage and amino acid identity are major determinants of mRNA stability in humans
Forrest Megan E., Narula Ashrut, Sweet Thomas J., Arango Daniel, Hanson Gavin, Ellis James, Oberdoerffer Shalini, Coller Jeff, Rissland Olivia S.
BioRxiv.

Super-resolution Molecular Map of Basal Foot Reveals Novel Cilium in Airway Multiciliated Cells
Nguyen Quynh P.H., Liu Zhen, Nanjundappa Rashmi, Megherbi Alexandre, Delgehyr Nathalie, Ouyang Hong, Zlock Lorna, Coyaud Etienne, Laurent Estelle, Dell Sharon, Finkbeiner Walter, Moraes Theo, Raught Brian, Czymmek Kirk, Munier Alice, Mahjoub Moe R., Mennella Vito
BioRxiv.

Enhancer-gene maps in the human and zebrafish genomes using evolutionary linkage conservation
Clément Yves, Torbey Patrick, Gilardi‑Hebenstreit Pascale, Crollius Hugues Roest
BioRxiv.

Linker histones regulate fine-scale chromatin organization and modulate developmental decisions in Arabidopsis
Rutowicz Kinga, Lirski Maciej, Mermaz Benoît, Schubert Jasmin, Teano Gianluca, Mestiri Imen, Kroteń Magdalena A., Fabrice Tohnyui Ndinyanka, Fritz Simon, Grob Stefan, Ringli Christoph, Cherkezyan Lusik, Barneche Fredy, Jerzmanowski Andrzej, Baroux Célia
BioRxiv.

Glycerol phosphate acyltransferase 6 controls filamentous pathogen interactions and cell wall properties of the tomato and Nicotiana benthamiana leaf epidermis
Fawke Stuart, Torode Thomas A., Gogleva Anna, Fich Eric A., Sørensen Iben, Yunusov Temur, Rose Jocelyn K.C., Schornack Sebastian
BioRxiv.

Why would parthenogenetic females systematically produce males who never transmit their genes to females ?
Grosmaire Manon, Launay Caroline, Siegwald Marion, Félix Marie‑Anne, Gouyon Pierre‑Henri, Delattre Marie
BioRxiv.

Transposon accumulation lines uncover histone H2A.Z-driven integration bias towards environmentally responsive genes
Quadrana Leandro, Etcheverry Mathilde, Gilly Arthur, Caillieux Erwann, Madoui Mohammed‑Amin, Guy Julie, Silveira Amanda Bortolini, Engelen Stefan, Baillet Victoire, Wincke Patrick, Aury Jean‑Marc, Colot Vincent
BioRxiv.

Fast two-photon volumetric imaging of an improved voltage indicator reveals electrical activity in deeply located neurons in the awake brain
Chavarha Mariya, Villette Vincent, Dimov Ivan K., Pradhan Lagnajeet, Evans Stephen W., Shi Dongqing, Yang Renzhi, Chamberland Simon, Bradley Jonathan, Mathieu Benjamin, St‑Pierre Francois, Schnitzer Mark J., Bi Guoqiang, Toth Katalin, Ding Jun, Dieudonné Stéphane, Lin Michael Z.
BioRxiv.

Nuclear actin interactome analysis links actin to KAT14 histone acetyl transferase and mRNA splicing
Viita Tiina, Kyheröinen Salla, Prajapati Bina, Virtanen Jori, Varjosalo Markku, Vartiainen Maria K.
BioRxiv.

Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping
Tabor Kathryn M., Marquart Gregory D., Hurt Christopher, Smith Trevor S., Geoca Alexandra K., Bhandiwad Ashwin A., Subedi Abhignya, Sinclair Jennifer L., Polys Nicholas F., Burgess Harold A.
BioRxiv.

Mapping DNA replication with nanopore sequencing
Hennion Magali, Arbona Jean‑Michel, Cruaud Corinne, Proux Florence, Tallec Benoît Le, Novikova Elizaveta, Engelen Stefan, Lemainque Arnaud, Audit Benjamin, Hyrien Olivier
BioRxiv.

Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons
Zhang Ye, Tsang Tin Ki, Bushong Eric A., Chu Li‑An, Chiang Ann‑Shyn, Ellisman Mark H., Reingruber Jürgen, Su Chih‑Ying
BioRxiv.

Changes in mRNA abundance drive shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription
Gilbertson Sarah, Federspiel Joel D., Hartenian Ella, Cristea Ileana M., Glaunsinger Britt
BioRxiv.

Quantitative study of the somitogenetic wavefront in zebrafish
Zhang Weiting, Ducos Bertrand, Delagrange Marine, Vriz Sophie, Bensimon David
BioRxiv.

Transfer RNA Genes Affect Chromosome Structure and Function via Local Effects
Hamdani Omar, Dhillon Namrita, Hsieh Tsung‑Han S., Fujita Takahiro, Ocampo Josefina, Kirkland Jacob G., Lawrimore Josh, Kobayashi Tetsuya J., Friedman Brandon, Fulton Derek, Wu Kenneth Y., Chereji Răzvan V., Oki Masaya, Bloom Kerry, Clark David J, Rando Oliver J., Kamakaka Rohinton T.
BioRxiv.

Evolution of DNA methylation in Papio baboons
Vilgalys Tauras, Rogers Jeffrey, Jolly Clifford, Mukherjee Sayan, Tung Jenny
BioRxiv.

Cerebrovascular Injuries Induce Lymphatic Invasion into Brain Parenchyma to Guide Vascular Regeneration in Zebrafish
Chen Jingying, He Jianbo, Yang Qifen, Zhang Yaoguang, Luo Lingfei
BioRxiv.

An interaction network of the human SEPT9 established by quantitative mass spectrometry reveals an interplay with myosin motors
Hecht Matthias, Rösler Reinhild, Wiese Sebastian, Johnsson Nils, Gronemeyer Thomas
BioRxiv.

Necessity and contingency in developmental genetic screens : LIN-3, Wnt and semaphorin pathways in vulval induction of the nematode Oscheius tipulae
Vargas‑Velazquez Amhed M., Besnard Fabrice, Félix Marie‑Anne
BioRxiv.

Active intermixing of indirect and direct neurons builds the striatal mosaic
Tinterri Andrea, Menardy Fabien, Diana Marco A., Lokmane Ludmilla, Keita Maryama, Coulpier Fanny, Lemoine Sophie, Mailhes Caroline, Mathieu Benjamin, Merchan‑Sala Paloma, Campbell Kenneth, Gyory Ildiko, Grosschedl Rudolf, Popa Daniela, Garel Sonia
BioRxiv.

Cerebellar learning using perturbations
Bouvier Guy, Aljadeff Johnatan, Clopath Claudia, Bimbard Célian, Ranft Jonas, Blot Antonin, Nadal Jean‑Pierre, Brunel Nicolas, Hakim Vincent, Barbour Boris
BioRxiv.

Mild drought induces phenotypic and DNA methylation plasticity but no transgenerational effects in Arabidopsis
Van Dooren Tom JM, Bortolini Silveira Amanda, Gilbault Elodie, Jiménez‑Gómez José M., Martin Antoine, Bach Liên, Tisné Sébastien, Quadrana Leandro, Loudet Olivier, Colot Vincent
BioRxiv.

Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes
Legrand Sylvain, Caron Thibault, Maumus Florian, Schvartzman Sol, Quadrana Leandro, Durand Eléonore, Gallina Sophie, Pauwels Maxime, Mazoyer Clément, Huyghe Lucie, Colot Vincent, Hanikenne Marc, Castric Vincent
BioRxiv.

A potential role for epigenetic processes in the acclimation response to elevated pCO2 in the model diatom Phaeodactylum tricornutum
Huang Ruiping, Ding Jiancheng, Gao Kunshan, de Carvalho Maria Helena Cruz, Tirichine Leila, Bowler Chris, Lin Xin
BioRxiv.

Nuclear actin is required for transcription during Drosophila oogenesis
Sokolova Maria, Moore Henna M., Prajapati Bina, Dopie Joseph, Meriläinen Leena, Honkanen Mikko, Matos Rita Cerejeira, Poukkula Minna, Hietakangas Ville, Vartiainen Maria K.
BioRxiv.

Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells
Zang Yunliang, Dieudonné Stéphane, Schutter Erik De
BioRxiv.

Active fluctuations modulate gene expression in mouse oocytes
Almonacid Maria, El‑Hayek Stephany, Othmani Alice, Queguiner Isabelle, Coulpier Fanny, Lemoine Sophie, Bastianelli Leila, Klein Christophe, Piolot Tristan, Mailly Philippe, Voituriez Raphaël, Genovesio Auguste, Verlhac Marie‑Hélène
BioRxiv.

Separation and Loss of Centrioles From Primordidal Germ Cells to Mature Oocytes in the Mouse
Simerly Calvin, Manil‑Ségalen Marion, Castro Carlos, Hartnett Carrie, Kong Dong, Verlhac Marie‑Hélène, Loncarek Jadranka, Schatten Gerald
BioRxiv.

Yeast PAF1 complex restricts the accumulation of RNA polymerase III and counters the replication stress on the transcribed genes
Bhalla Pratibha, Vernekar Dipti, Shukla Ashutosh, Gilquin Benoit, Couté Yohann, Bhargava Purnima
BioRxiv.

Cell adhesion promoted by a unique Shigella IpaA vinculin- and talin-binding site
Valencia‑Gallardo Cesar, Bou‑Nader Charles, Aguilar Daniel, Carayol Nathalie, Quenech’Du Nicole, Pecqueur Ludovic, Park HaJeung, Fontecave Marc, Izard Tina, Van Nhieu Guy Tran
BioRxiv.

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise
Schöne Stefanie, Bothe Melissa, Einfeldt Edda, Borschiwer Marina, Benner Philipp, Vingron Martin, Thomas‑Chollier Morgane, Meijsing Sebastiaan H.
BioRxiv.

Dual-layer transposon repression in heads of Drosophila melanogaster
van den Beek Marius, da Silva Bruno, Pouch Juliette, Ali Chaouche Mohammed el amine, Carré Clément, Antoniewski Christophe
BioRxiv.

DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis
Nassrallah Amr, Rougée Martin, Bourbousse Clara, Drevensek Stéphanie, Fonseca Sandra, Iniesto Elisa, Ait‑Mohamed Ouardia, Deton‑Cabanillas Anne‑Flore, Zabulonb Gerald, Ahmed Ikhlak, Stroebel David, Masson Vanessa, Lombard Bérangère, Eeckhout Dominique, Gevaert Kris, Loew Damarys, Genovesio Auguste, Breyton Cécile, de Jaeger Geert, Bowler Chris, Rubio Vicente, Barneche Fredy
BioRxiv.

Inter-species conservation of organisation and function between non-homologous regional centromeres
Tong Pin, Pidoux Alison L., Toda Nicholas R.T., Ard Ryan, Berger Harald, Shukla Manu, Torres‑Garcia Jesus, Mueller Carolin A., Nieduszynski Conrad A., Allshire Robin C.
BioRxiv.

Ribosome provisioning activates a bistable switch coupled to fast exit from stationary phase
Remigi P., Ferguson G.C., Monte S. De, Rainey P.B.
BioRxiv.

Non-cell autonomous OTX2 homeoprotein regulates visual cortex plasticity through Gadd45b/g
Apulei Jessica, Kim Namsuk, Testa Damien, Ribot Jérôme, Morizet David, Bernard Clémence, Jourdren Laurent, Blugeon Corinne, Di Nardo Ariel A., Prochiantz Alain
BioRxiv.

The CoLoMoTo Interactive Notebook : Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Naldi Aurélien, Hernandez Céline, Levy Nicolas, Stoll Gautier, Monteiro Pedro T., Chaouiya Claudine, Helikar Tomáš, Zinovyev Andrei, Calzone Laurence, Cohen‑Boulakia Sarah, Thieffry Denis, Paulevé Loïc
BioRxiv.

Logical modelling and analysis of cellular regulatory networks with GINsim 3.0
Naldi Aurélien, Hernandez Céline, Abou‑Jaoudé Wassim, Monteiro Pedro T., Chaouiya Claudine, Thieffry Denis
BioRxiv.

Enrichment of gene variants associated with treatable genetic disorders in psychiatric populations
Sriretnakumar Venuja, Harripaul Ricardo, Vincent John B., Kennedy James L., So Joyce
BioRxiv.

Transcriptional control and exploitation of an immune-responsive family of plant retrotransposons
Zervudacki Jérôme, Yu Agnès, Amesefe Delase, Wang Jingyu, Drouaud Jan, Navarro Lionel, Deleris Angélique
BioRxiv.

Sequence-directed action of RSC remodeler and pioneer factors positions +1 nucleosome to facilitate transcription
Kubik Slawomir, O’Duibhir Eoghan, de Jonge Wim, Mattarocci Stefano, Albert Benjamin, Falcone Jean‑Luc, Bruzzone Maria Jessica, Holstege Frank C.P., Shore David
BioRxiv.

Transcription-dependent regulation of replication dynamics modulates genome stability
Blin Marion, Le Tallec Benoît, Naehse Viola, Schmidt Mélanie, Millot Gael A., Prioleau Marie‑Noëlle, Debatisse Michelle
BioRxiv.

Ubiquitous abundance distribution of non-dominant plankton across the world’s ocean
Ser‑Giacomi Enrico, Zinger Lucie, Malviya Shruti, De Vargas Colomban, Karsenti Eric, Bowler Chris, De Monte Silvia
BioRxiv.

DeepHINT : Understanding HIV-1 integration via deep learning with attention
Hu Hailin, Xiao An, Zhang Sai, Li Yangyang, Shi Xuanling, Jiang Tao, Zhang Linqi, Zhang Lei, Zeng Jianyang
BioRxiv.

Chromosome evolution at the origin of the ancestral vertebrate genome
Sacerdot Christine, Louis Alexandra, Bon Céline, Roest Crollius Hugues
BioRxiv.

Universal temporal rate of DNA replication origin firing : A balance between origin activation and passivation
Arbona Jean‑Michel, Goldar Arach, Hyrien Olivier, Arneodo Alain, Audit Benjamin
BioRxiv.

Characterizing the Liquid-liquid Phase Co-existence in Biomembrane : Insights from Local Non-affine Deformation and Topological Rearrangements
Iyer Sahithya S., Tripathy Madhusmita, Srivastava Anand
BioRxiv.

High-throughput optical mapping of replicating DNA
De Carli Francesco, Menezes Nikita, Berrabah Wahiba, Barbe Valérie, Genovesio Auguste, Hyrien Olivier
BioRxiv.

Ranked tree shapes, non-random extinctions and the loss of phylogenetic diversity
Maliet Odile, Gascuel Fanny, Lambert Amaury
BioRxiv.

Aquaporin-4 dependent glymphatic solute transport in rodent brain
Mestre Humberto, Kress Benjamin T., Zou Wenyan, Pu Tinglin, Murlidharan Giridhar, Rivera Ruth M. Castellanos, Simon Matthew J., Pike Martin M., Plog Benjamin A, Xavier Anna L. R., Thrane Alexander S., Lundgaard Iben, Thomas John H., Xiao Ming, Asokan Aravind, Miff Jeffrey J., Nedergaard Maiken
BioRxiv.

A bacterial GW-effector targets Arabidopsis AGO1 to promote pathogenicity and induces Effector-triggered immunity by disrupting AGO1 homeostasis
Thiébeauld Odon, Charvin Magali, Singla Rastogi Meenu, Yang Fan, Pontier Dominique, Pouzet Cécile, Bapaume Laure, Li Guangyong, Deslandes Laurent, Lagrange Thierry, Alfano James R., Navarro Lionel
BioRxiv.

Redundancy principle for optimal random search in biology
Schuss Z., Basnayake K., Holcman D.
BioRxiv.

Dengue modeling in rural Cambodia : statistical performance versus epidemiological relevance
Champagne Clara, Paul Richard, Ly Sowath, Duong Veasna, Leang Rithea, Cazelles Bernard
BioRxiv.

Partial selfing eliminates inbreeding depression while maintaining genetic diversity
Chelo Ivo M., Afonso Bruno, Carvalho Sara, Theologidis Ioannis, Goy Christine, Pino‑Querido Ania, Proulx Stephen R., Teotónio Henrique
BioRxiv.

Slower environmental change hinders adaptation from standing genetic variation
Guzella Thiago S., Dey Snigdhadip, Chelo Ivo M., Pino‑Querido Ania, Pereira Veronica F., Proulx Stephen R., Teotónio Henrique
BioRxiv.

A simple and powerful analysis of lateral subdiffusion using single particle tracking
Renner Marianne, Wang Lili, Levi Sabine, Hennekinne Laetitia, Triller Antoine
BioRxiv.

miR-128 inhibits telomerase activity by targeting TERT mRNA
Guzman Herlinda, Sanders Katie, Idica Adam, Bochnakian Aurore, Jury Douglas, Daugaard Iben, Zisoulis Dimitrios G, Pedersen Irene Munk
BioRxiv.

An epigenetic mechanism for cavefish eye degeneration
Gore Aniket V., Tomins Kelly A., Iben James, Ma Li, Castranova Daniel, Davis Andrew, Parkhurst Amy, Jeffery William R., Weinstein Brant M.
BioRxiv.

miR-128-induced LINE-1 restriction is dependent on down-regulation of hnRNPA1
Fung Lianna, Guzman Herlinda, Sevrioukov Evgueni, Idica Adam, Park Eddie, Bochnakien Aurore, Daugaard Iben, Jury Douglas, Mortazavi Ali, Zisoulis Dimitrios G, Pedersen Irene Munk
BioRxiv.

MicroRNA miR-128 represses LINE-1 (L1) retrotransposition by downregulating the nuclear import factor TNPO1
Idica Adam, Sevrioukov Evgueni A, Zisoulis Dimitri G, Hamdorf Matthias, Daugaard Iben, Kadandale Pavan, Pedersen Irene
BioRxiv.

Interferon-inducible miR-128 modulates HIV-1 replication by targeting TNPO3 mRNA
Bochnakian Aurore, Zisoulis Dimitrios G, Idica Adam, Zhen Anjie, KewalRamani Vineet N, Daugaard Iben, Hamdorf Matthias, Kitchen Scott, Lee KyeongEun, Pedersen Irene Munk
BioRxiv.

Cyclin G and the Polycomb Repressive Complexes PRC1 and PR-DUB cooperate for developmental stability
Dardalhon‑Cuménal Delphine, Deraze Jérôme, Dupont Camille A, Ribeiro Valérie, Coléno‑Costes Anne, Pouch Juliette, Le Crom Stéphane, Thomassin Hélène, Debat Vincent, Randsholt Neel B, Peronnet Frédérique
BioRxiv.

Integrative analysis of large scale transcriptome data draws a comprehensive functional landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms
Rastogi Achal, Maheswari Uma, Dorrell Richard G., Maumus Florian, Jimenez Vieira Fabio Rocha, Kustka Adam, McCarthy James, Allen Andy E., Kersey Paul, Bowler Chris, Tirichine Leila
BioRxiv.

Detecting environment-dependent diversification from phylogenies : a simulation study and some empirical illustrations
Lewitus Eric, Morlon Hélène
BioRxiv.

Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice
Milet Cécile, Bléher Marianne, Allbright Kassandra, Orgeur Mickael, Coulpier Fanny, Duprez Delphine, Havis Emmanuelle
BioRxiv.

The mechanism of transcription start site selection
Yu Libing, Winkelman Jared T., Pukhrambam Chirangini, Strick Terence R., Nickels Bryce E., Ebright Richard H.
BioRxiv.

Soil community assembly varies across body sizes in a tropical forest
Zinger Lucie, Taberlet Pierre, Schimann Heidy, Bonin Aurélie, Boyer Frédéric, Barba Marta De, Gaucher Philippe, Gielly Ludovic, Giguet‑Covex Charline, Iribar Amaia, Réjou‑Méchain Maxime, Rayé Gilles, Rioux Delphine, Schilling Vincent, Tymen Blaise, Viers Jérôme, Zouiten Cyril, Thuiller Wilfried, Coissac Eric, Chave Jérôme
BioRxiv.

Evolution of gene expression after whole-genome duplication : new insights from the spotted gar genome
Pasquier Jeremy, Braasch Ingo, Batzel Peter, Cabau Cedric, Montfort Jérome, Nguyen Thaovi, Jouanno Elodie, Berthelot Camille, Klopp Christophe, Journot Laurent, Postlethwait John H., Guiguen Yann, Bobe Julien
BioRxiv.

Chromatin mobility after DNA damage is modified to enhance long distance explorations and minimize local resampling
Miné‑Hattab Judith, Recamier Vincent, Izeddin Ignacio, Rothstein Rodney, Darzacq Xavier
BioRxiv.

Crowding-induced transcriptional bursts dictate polymerase and nucleosome density profiles along genes
Berg Aafke A van den, Depken Martin
BioRxiv.

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
Stadhouders Ralph, Vidal Enrique, Serra François, Stefano Bruno Di, Le Dily François, Quilez Javier, Gomez Antonio, Collombet Samuel, Berenguer Clara, Cuartero Yasmina, Hecht Jochen, Filion Guillaume, Beato Miguel, Marti‑Renom Marc A., Graf Thomas
BioRxiv.

Cerebellar re-encoding of self-generated head movements
Dugué Guillaume P., Tihy Matthieu, Gourévitch Boris, Léna Clément
BioRxiv.

A computational toolbox and step-by-step tutorial for the analysis of neuronal population dynamics in calcium imaging data
Romano Sebastián A., Pérez‑Schuster Verónica, Jouary Adrien, Candeo Alessia, Boulanger‑Weill Jonathan, Sumbre Germán
BioRxiv.

The genealogical decomposition of a matrix population model with applications to the aggregation of stages
Bienvenu François, Akçay Erol, Legendre Stéphane, McCandlish David M.
BioRxiv.

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns
Saudemont Baptiste, Popa Alexandra, Parmley Joanna L., Rocher Vincent, Blugeon Corinne, Necsulea Anamaria, Meyer Eric, Duret Laurent
BioRxiv.

Initiation of DNA replication requires actin dynamics and formin activity
Nikolaos Parisis, Krasinska Liliana, Harker Bethany, Urbach Serge, Rossignol Michel, Camasses Alain, Dewar James, Morin Nathalie, Fisher Daniel
BioRxiv.

RSAT matrix-clustering : dynamic exploration and redundancy reduction of transcription factor binding motif collections
Castro‑Mondragon Jaime Abraham, Jaeger Sébastien, Thieffry Denis, Thomas‑Chollier Morgane, van Helden Jacques
BioRxiv.

Evolutionary forces affecting synonymous variations in plant genomes
Clément Yves, Sarah Gautier, Holtz Yan, Homa Felix, Pointet Stéphanie, Contreras Sandy, Nabholz Benoit, Sabot François, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Besnard Guillaume, Berger Angélique, Cardi Céline, De Bellis Fabien, Fouet Olivier, Jourda Cyril, Khadari Bouchaib, Lanaud Claire, Leroy Thierry, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean‑Pierre, Pham Jean‑Louis, David Jacques, Glémin Sylvain
BioRxiv.

Structure in the variability of the basic reproductive number (R0) for Zika epidemics in the Pacific islands
Champagne Clara, Salthouse David Georges, Paul Richard, Cao‑Lormeau Van‑Mai, Roche Benjamin, Cazelles Bernard
BioRxiv.

How human behavior drives the propagation of an emerging infection : the case of the 2014 Chikungunya outbreak in Martinique
Roche Benjamin, Gaillard Béatrice, Léger Lucas, Moutenda Renélise, Sochacki Thomas, Cazelles Bernard, Ledrans Martine, Blateau Alain, Fontenille Didier, Etienne Manuel, Simard Frédéric, Salathé Marcel, Yébakima André
BioRxiv.

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses
Roux Simon, Brum Jennifer R., Dutilh Bas E., Sunagawa Shinichi, Duhaime Melissa B., Loy Alexander, Poulos Bonnie T., Solonenko Natalie, Lara Elena, Poulain Julie, Pesant Stéphane, Kandels‑Lewis Stefanie, Dimier Céline, Picheral Marc, Searson Sarah, Cruaud Corinne, Alberti Adriana, Duarte Carlos M., Gasol Josep M., Vaqué Dolors, Bork Peer, Acinas Silvia G., Wincker Patrick, Sullivan Matthew B., Acinas Silvia G., Bork Peer, Boss Emmanuel, Bowler Chris, Vargas Colomban de, Follows Michael, Gorsky Gabriel, Grimsley Nigel, Hingamp Pascal, Iudicone Daniele, Jaillon Olivier, Kandels‑Lewis Stefanie, Karp‑Boss Lee, Karsenti Eric, Krzic Uros, Not Fabrice, Ogata Hiroyuki, Pesant Stephane, Raes Jeroen, Reynaud Emmanuel G., Sardet Christian, Sieracki Mike, Speich Sabrina, Stemmann Lars, Sullivan Matthew B., Sunagawa Shinichi, Velayoudon Didier, Wincker Patrick
BioRxiv.

Automatic classification of behavior in zebrafish larvae
Jouary Adrien, Sumbre German
BioRxiv.

On the evolutionary origins of equity
Debove Stéphane, Baumard Nicolas, André Jean‑Baptiste
BioRxiv.

Discovery of a Natural Microsporidian Pathogen with a Broad Tissue Tropism in Caenorhabditis elegans
Luallen Robert J., Reinke Aaron W., Tong Linda, Botts Michael R., Félix Marie‑Anne, Troemel Emily R.
BioRxiv.

Estimating the effect of competition on trait evolution using maximum likelihood inference
Drury Jonathan, Clavel Julien, Manceau Marc, Morlon Hélène
BioRxiv.

Characterizing and comparing phylogenies from their Laplacian spectrum
Lewitus Eric, Morlon Hélène
BioRxiv.

Cooperative development of logical modelling standards and tools with CoLoMoTo
Naldi Aurélien, Monteiro Pedro T., Müssel Christoph, Kestler Hans A., Thieffry Denis, Xenarios Ioannis, Saez‑Rodriguez Julio, Helikar Tomas, Chaouiya Claudine
BioRxiv.

Analysis of the study of the cerebellar pinceau by Korn and Axelrad
Blot Antonin, Barbour Boris
BioRxiv.