Publications
2022
Principled, practical, flexible, fast: a new approach to phylogenetic factor analysis.
Hassler GW, Gallone B, Aristide L, Allen WL, Tolkoff MR, Holbrook AJ, Baele G, Lemey P, Suchard MA
Methods Ecol Evol. 2022 Oct. 13(10):2181-2197.
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean.
Delmont TO, Gaia M, Hinsinger DD, Frémont P, Vanni C, Fernandez‑Guerra A, Eren AM, Kourlaiev A, d’Agata L, Clayssen Q, Villar E, Labadie K, Cruaud C, Poulain J, Da Silva C, Wessner M, Noel B, Aury JM, de Vargas C, Bowler C, Karsenti E, Pelletier E, Wincker P, Jaillon O
Cell Genom. 2022 May 11. 2(5):100123.
FUSTA: leveraging FUSE for manipulation of multiFASTA files at scale.
Delehelle F, Roest Crollius H
Bioinform Adv. 2022. 2(1):vbac091.
Neurotransmitter content heterogeneity within an interneuron class shapes inhibitory transmission at a central synapse.
Dumontier D, Mailhes‑Hamon C, Supplisson S, Dieudonné S
Front Cell Neurosci. 2022. 16:1060189.
Guidelines for G-quadruplexes: I. In vitro characterization.
Luo Y, Granzhan A, Marquevielle J, Cucchiarini A, Lacroix L, Amrane S, Verga D, Mergny JL
Biochimie. 2022 Dec 31.
In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in Phaeodactylum tricornutum.
Kazamia E, Mach J, McQuaid JB, Gao X, Coale TH, Malych R, Camadro JM, Lesuisse E, Allen AE, Bowler C, Sutak R
Plant Direct. 2022 Dec. 6(12):e472.
p53/p21 pathway activation contributes to the ependymal fate decision downstream of GemC1.
Ortiz‑Álvarez G, Fortoul A, Srivastava A, Moreau MX, Bouloudi B, Mailhes‑Hamon C, Delgehyr N, Faucourt M, Bahin M, Blugeon C, Breau M, Géli V, Causeret F, Meunier A, Spassky N
Cell Rep. 2022 Dec 13. 41(11):111810.
Philippe Ascher (1936-2022).
Paoletti P, Trautmann A, Marty A
Neuron. 2022 Dec 7. 110(23):3864-3865.
Displacement and dissociation of oligonucleotides during DNA hairpin closure under strain.
Ding F, Cocco S, Raj S, Manosas M, Nguyen TTT, Spiering MM, Bensimon D, Allemand JF, Croquette V
Nucleic Acids Res. 2022 Nov 28. 50(21):12082-12093.
A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA.
Kjær KH, Winther Pedersen M, De Sanctis B, De Cahsan B, Korneliussen TS, Michelsen CS, Sand KK, Jelavić S, Ruter AH, Schmidt AMA, Kjeldsen KK, Tesakov AS, Snowball I, Gosse JC, Alsos IG, Wang Y, Dockter C, Rasmussen M, Jørgensen ME, Skadhauge B, Prohaska A, Kristensen JÅ, Bjerager M, Allentoft ME, Coissac E, Rouillard A, Simakova A, Fernandez‑Guerra A, Bowler C, Macias‑Fauria M, Vinner L, Welch JJ, Hidy AJ, Sikora M, Collins MJ, Durbin R, Larsen NK, Willerslev E
Nature. 2022 Dec. 612(7939):283-291.
Alterations of the axon initial segment in multiple sclerosis grey matter.
Senol AD, Pinto G, Beau M, Guillemot V, Dupree JL, Stadelmann C, Ranft J, Lubetzki C, Davenne M
Brain Commun. 2022. 4(6):fcac284.
Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros.
Nef C, Madoui MA, Pelletier É, Bowler C
PLoS Biol. 2022 Nov. 20(11):e3001893.
Evaluating cancer etiology and risk with a mathematical model of tumor evolution.
Pénisson S, Lambert A, Tomasetti C
Nat Commun. 2022 Nov 24. 13(1):7224.
Estimating the age of poorly dated fossil specimens and deposits using a total-evidence approach and the fossilized birth-death process.
Barido‑Sottani J, Żyła D, Heath TA
Syst Biol. 2022 Nov 16.
Microglia states and nomenclature: A field at its crossroads.
Paolicelli RC, Sierra A, Stevens B, Tremblay ME, Aguzzi A, Ajami B, Amit I, Audinat E, Bechmann I, Bennett M, Bennett F, Bessis A, Biber K, Bilbo S, Blurton‑Jones M, Boddeke E, Brites D, Brône B, Brown GC, Butovsky O, Carson MJ, Castellano B, Colonna M, Cowley SA, Cunningham C, Davalos D, De Jager PL, de Strooper B, Denes A, Eggen BJL, Eyo U, Galea E, Garel S, Ginhoux F, Glass CK, Gokce O, Gomez‑Nicola D, González B, Gordon S, Graeber MB, Greenhalgh AD, Gressens P, Greter M, Gutmann DH, Haass C, Heneka MT, Heppner FL, Hong S, Hume DA, Jung S, Kettenmann H, Kipnis J, Koyama R, Lemke G, Lynch M, Majewska A, Malcangio M, Malm T, Mancuso R, Masuda T, Matteoli M, McColl BW, Miron VE, Molofsky AV, Monje M, Mracsko E, Nadjar A, Neher JJ, Neniskyte U, Neumann H, Noda M, Peng B, Peri F, Perry VH, Popovich PG, Pridans C, Priller J, Prinz M, Ragozzino D, Ransohoff RM, Salter MW, Schaefer A, Schafer DP, Schwartz M, Simons M, Smith CJ, Streit WJ, Tay TL, Tsai LH, Verkhratsky A, von Bernhardi R, Wake H, Wittamer V, Wolf SA, Wu LJ, Wyss‑Coray T
Neuron. 2022 Nov 2. 110(21):3458-3483.
Zn(2+) inhibits spatial memory and hippocampal place cell representation through high-affinity binding to the NMDA receptor GluN2A subunit.
Sikora J, Di Bisceglie Caballero S, Reiss D, Kieffer BL, Paoletti P, Jacob PY, Ouagazzal AM
iScience. 2022 Nov 18. 25(11):105355.
Dynamic Regulation of Mitochondrial [Ca(2+)] in Hippocampal Neurons.
Kushnireva L, Basnayake K, Holcman D, Segal M, Korkotian E
Int J Mol Sci. 2022 Oct 14. 23(20).
Advanced Image Analysis Methods for Automated Segmentation of Subnuclear Chromatin Domains.
Johann To Berens P, Schivre G, Theune M, Peter J, Sall SO, Mutterer J, Barneche F, Bourbousse C, Molinier J
Epigenomes. 2022 Oct 5. 6(4).
Fate and biological impact of persistent luminescence nanoparticles after injection in mice: a one-year follow-up.
Lécuyer T, Seguin J, Balfourier A, Delagrange M, Burckel P, Lai‑Kuen R, Mignon V, Ducos B, Tharaud M, Saubaméa B, Scherman D, Mignet N, Gazeau F, Richard C
Nanoscale. 2022 Nov 3. 14(42):15760-15771.
A metabolic, phylogenomic and environmental atlas of diatom plastid transporters from the model species Phaeodactylum.
Liu S, Storti M, Finazzi G, Bowler C, Dorrell RG
Front Plant Sci. 2022. 13:950467.
Flux coupling, not specificity, shapes the transport and phylogeny of SLC6 glycine transporters.
Le Guellec B, Rousseau F, Bied M, Supplisson S
Proc Natl Acad Sci U S A. 2022 Oct 11. 119(41):e2205874119.
From individual-based epidemic models to McKendrick-von Foerster PDEs: a guide to modeling and inferring COVID-19 dynamics.
Foutel‑Rodier F, Blanquart F, Courau P, Czuppon P, Duchamps JJ, Gamblin J, Kerdoncuff É, Kulathinal R, Régnier L, Vuduc L, Lambert A, Schertzer E
J Math Biol. 2022 Sep 28. 85(4):43.
The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive-strand RNA viruses.
Bonaventure B, Rebendenne A, Chaves Valadão AL, Arnaud‑Arnould M, Gracias S, Garcia de Gracia F, McKellar J, Labaronne E, Tauziet M, Vivet‑Boudou V, Bernard E, Briant L, Gros N, Djilli W, Courgnaud V, Parrinello H, Rialle S, Blaise M, Lacroix L, Lavigne M, Paillart JC, Ricci EP, Schulz R, Jouvenet N, Moncorgé O, Goujon C
EMBO Rep. 2022 Nov 7. 23(11):e54061.
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands.
Emerson BC, Borges PAV, Cardoso P, Convey P, deWaard JR, Economo EP, Gillespie RG, Kennedy S, Krehenwinkel H, Meier R, Roderick GK, Strasberg D, Thébaud C, Traveset A, Creedy TJ, Meramveliotakis E, Noguerales V, Overcast I, Morlon H, Papadopoulou A, Vogler AP, Arribas P, Andújar C
Mol Ecol. 2022 Sep 6.
Gene essentiality and variability: What is the link? A within- and between-species perspective.
Dubois‑Mignon T, Monget P
Bioessays. 2022 Nov. 44(11):e2200132.
Individual differences in cocaine-induced conditioned place preference in male rats: Behavioral and transcriptomic evidence.
Atehortua Martinez LA, Curis E, Mekdad N, Larrieu C, Courtin C, Jourdren L, Blugeon C, Laplanche JL, Megarbane B, Marie‑Claire C, Benturquia N
J Psychopharmacol. 2022 Oct. 36(10):1161-1175.
Evolving social behavior through selection of single-cell adhesion in Dictyostelium discoideum.
Adiba S, Forget M, De Monte S
iScience. 2022 Sep 16. 25(9):105006.
Computational methods and diffusion theory in triangulation sensing to model neuronal navigation.
Dobramysl U, Holcman D
Rep Prog Phys. 2022 Oct 5. 85(10).
Comparing different computational approaches for detecting long-term vertical transmission in host-associated microbiota.
Perez‑Lamarque B, Morlon H
Mol Ecol. 2022 Sep 6.
High-throughput super-resolution single-particle trajectory analysis reconstructs organelle dynamics and membrane reorganization.
Parutto P, Heck J, Lu M, Kaminski C, Avezov E, Heine M, Holcman D
Cell Rep Methods. 2022 Aug 22. 2(8):100277.
Early macrophage response to obesity encompasses Interferon Regulatory Factor 5 regulated mitochondrial architecture remodelling.
Orliaguet L, Ejlalmanesh T, Humbert A, Ballaire R, Diedisheim M, Julla JB, Chokr D, Cuenco J, Michieletto J, Charbit J, Lindén D, Boucher J, Potier C, Hamimi A, Lemoine S, Blugeon C, Legoix P, Lameiras S, Baudrin LG, Baulande S, Soprani A, Castelli FA, Fenaille F, Riveline JP, Dalmas E, Rieusset J, Gautier JF, Venteclef N, Alzaid F
Nat Commun. 2022 Aug 30. 13(1):5089.
The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants.
Fonouni‑Farde C, Christ A, Blein T, Legascue MF, Ferrero L, Moison M, Lucero L, Ramírez‑Prado JS, Latrasse D, Gonzalez D, Benhamed M, Quadrana L, Crespi M, Ariel F
Genome Biol. 2022 Aug 29. 23(1):181.
Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured Populations.
Scire J, Barido‑Sottani J, Kühnert D, Vaughan TG, Stadler T
Viruses. 2022 Jul 27. 14(8).
An interplay between cellular growth and atypical fusion defines morphogenesis of a modular glial niche in Drosophila.
Rujano MA, Briand D, Ðelić B, Marc J, Spéder P
Nat Commun. 2022 Aug 25. 13(1):4999.
Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy.
Liu Z, Lu X, Villette V, Gou Y, Colbert KL, Lai S, Guan S, Land MA, Lee J, Assefa T, Zollinger DR, Korympidou MM, Vlasits AL, Pang MM, Su S, Cai C, Froudarakis E, Zhou N, Patel SS, Smith CL, Ayon A, Bizouard P, Bradley J, Franke K, Clandinin TR, Giovannucci A, Tolias AS, Reimer J, Dieudonné S, St‑Pierre F
Cell. 2022 Sep 1. 185(18):3408-3425.e29.
Single amino-acid mutation in a Drosoph ila melanogaster ribosomal protein: An insight in uL11 transcriptional activity.
Grunchec H, Deraze J, Dardalhon‑Cuménal D, Ribeiro V, Coléno‑Costes A, Dias K, Bloyer S, Mouchel‑Vielh E, Peronnet F, Thomassin H
PLoS One. 2022. 17(8):e0273198.
Editorial overview: Special Issue on ’Chemogenetics and photopharmacology’.
Levitz J, Paoletti P
Curr Opin Pharmacol. 2022 Oct. 66:102273.
Novel approaches to study helicases using magnetic tweezers.
Ruiz‑Gutierrez N, Rieu M, Ouellet J, Allemand JF, Croquette V, Le Hir H
Methods Enzymol. 2022. 673:359-403.
An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication.
Parey E, Louis A, Montfort J, Guiguen Y, Roest Crollius H, Berthelot C
Genome Res. 2022 Aug 12. 32(9):1685-97.
Light, chromatin, action: nuclear events regulating light signaling in Arabidopsis.
Patitaki E, Schivre G, Zioutopoulou A, Perrella G, Bourbousse C, Barneche F, Kaiserli E
New Phytol. 2022 Oct. 236(2):333-349.
Strand switching mechanism of Pif1 helicase induced by its collision with a G-quadruplex embedded in dsDNA.
Valle‑Orero J, Rieu M, Tran PLT, Joubert A, Raj S, Allemand JF, Croquette V, Boulé JB
Nucleic Acids Res. 2022 Aug 26. 50(15):8767-8778.
The success of the bloom-forming cyanobacteria Planktothrix: Genotypes variability supports variable responses to light and temperature stress.
Kim Tiam S, Comte K, Dalle C, Delagrange M, Djediat C, Ducos B, Duval C, Feilke K, Hamlaoui S, Le Manach S, Setif P, Yéprémian C, Marie B, Kirilovsky D, Gugger M, Bernard C
Harmful Algae. 2022 Aug. 117:102285.
Dual ontogeny of disease-associated microglia and disease inflammatory macrophages in aging and neurodegeneration.
Silvin A, Uderhardt S, Piot C, Da Mesquita S, Yang K, Geirsdottir L, Mulder K, Eyal D, Liu Z, Bridlance C, Thion MS, Zhang XM, Kong WT, Deloger M, Fontes V, Weiner A, Ee R, Dress R, Hang JW, Balachander A, Chakarov S, Malleret B, Dunsmore G, Cexus O, Chen J, Garel S, Dutertre CA, Amit I, Kipnis J, Ginhoux F
Immunity. 2022 Aug 9. 55(8):1448-1465.e6.
Blind cavefish retain functional connectivity in the tectum despite loss of retinal input.
Lloyd E, McDole B, Privat M, Jaggard JB, Duboué ER, Sumbre G, Keene AC
Curr Biol. 2022 Sep 12. 32(17):3720-3730.e3.
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems.
Richter DJ, Watteaux R, Vannier T, Leconte J, Frémont P, Reygondeau G, Maillet N, Henry N, Benoit G, Da Silva O, Delmont TO, Fernàndez‑Guerra A, Suweis S, Narci R, Berney C, Eveillard D, Gavory F, Guidi L, Labadie K, Mahieu E, Poulain J, Romac S, Roux S, Dimier C, Kandels S, Picheral M, Searson S, Pesant S, Aury JM, Brum JR, Lemaitre C, Pelletier E, Bork P, Sunagawa S, Lombard F, Karp‑Boss L, Bowler C, Sullivan MB, Karsenti E, Mariadassou M, Probert I, Peterlongo P, Wincker P, de Vargas C, Ribera d’Alcalà M, Iudicone D, Jaillon O
Elife. 2022 Aug 3. 11.
Chromosome-Scale Genome Assembly of the Marine Oleaginous Diatom Fistulifera solaris.
Maeda Y, Kobayashi R, Watanabe K, Yoshino T, Bowler C, Matsumoto M, Tanaka T
Mar Biotechnol (NY). 2022 Aug. 24(4):788-800.
Vertebrate Cell Differentiation, Evolution, and Diseases: The Vertebrate-Specific Developmental Potential Guardians VENTX/NANOG and POU5/OCT4 Enter the Stage.
Ducos B, Bensimon D, Scerbo P
Cells. 2022 Jul 26. 11(15).
A Curvilinear-Path Umbrella Sampling Approach to Characterizing the Interactions Between Rapamycin and Three FKBP12 Variants.
Joshi DC, Gosse C, Huang SY, Lin JH
Front Mol Biosci. 2022. 9:879000.
Structure and specialization of mycorrhizal networks in phylogenetically diverse tropical communities.
Perez‑Lamarque B, Petrolli R, Strullu‑Derrien C, Strasberg D, Morlon H, Selosse MA, Martos F
Environ Microbiome. 2022 Jul 20. 17(1):38.
Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods.
Arribas P, Andújar C, Bohmann K, deWaard JR, Economo EP, Elbrecht V, Geisen S, Goberna M, Krehenwinkel H, Novotny V, Zinger L, Creedy TJ, Meramveliotakis E, Noguerales V, Overcast I, Morlon H, Papadopoulou A, Vogler AP, Emerson BC
Gigascience. 2022 Jul 19. 11.
On the stability of stalled RNA polymerase and its removal by RapA.
Portman JR, Qayyum MZ, Murakami KS, Strick TR
Nucleic Acids Res. 2022 Jul 22. 50(13):7396-7405.
Schwann cell precursors represent a neural crest-like state with biased multipotency.
Kastriti ME, Faure L, Von Ahsen D, Bouderlique TG, Boström J, Solovieva T, Jackson C, Bronner M, Meijer D, Hadjab S, Lallemend F, Erickson A, Kaucka M, Dyachuk V, Perlmann T, Lahti L, Krivanek J, Brunet JF, Fried K, Adameyko I
EMBO J. 2022 Sep 1. 41(17):e108780.
Recommendations for empowering early career researchers to improve research culture and practice.
Kent BA, Holman C, Amoako E, Antonietti A, Azam JM, Ballhausen H, Bediako Y, Belasen AM, Carneiro CFD, Chen YC, Compeer EB, Connor CAC, Crüwell S, Debat H, Dorris E, Ebrahimi H, Erlich JC, Fernández‑Chiappe F, Fischer F, Gazda MA, Glatz T, Grabitz P, Heise V, Kent DG, Lo H, McDowell G, Mehta D, Neumann WJ, Neves K, Patterson M, Penfold NC, Piper SK, Puebla I, Quashie PK, Quezada CP, Riley JL, Rohmann JL, Saladi S, Schwessinger B, Siegerink B, Stehlik P, Tzilivaki A, Umbers KDL, Varma A, Walavalkar K, de Winde CM, Zaza C, Weissgerber TL
PLoS Biol. 2022 Jul. 20(7):e3001680.
Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks.
Voznica J, Zhukova A, Boskova V, Saulnier E, Lemoine F, Moslonka‑Lefebvre M, Gascuel O
Nat Commun. 2022 Jul 6. 13(1):3896.
A self-consistent analytical theory for rotator networks under stochastic forcing: Effects of intrinsic noise and common input.
Ranft J, Lindner B
Chaos. 2022 Jun. 32(6):063131.
Antennal movements can be used as behavioral readout of odor valence in honey bees.
Gascue F, Marachlian E, Azcueta M, Locatelli FF, Klappenbach M
IBRO Neurosci Rep. 2022 Jun. 12:323-332.
Critical slowing down may account for the robustness of development.
Zhang W, Scerbo P, Ducos B, Bensimon D
Proc Natl Acad Sci U S A. 2022 Jun 28. 119(26):e2205630119.
Biosynthetic potential of the global ocean microbiome.
Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlström CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, Larralde M, Carroll LM, Sánchez P, Zayed AA, Cronin DR, Acinas SG, Bork P, Bowler C, Delmont TO, Gasol JM, Gossert AD, Kahles A, Sullivan MB, Wincker P, Zeller G, Robinson SL, Piel J, Sunagawa S
Nature. 2022 Jul. 607(7917):111-118.
GluN3A excitatory glycine receptors control adult cortical and amygdalar circuits.
Bossi S, Dhanasobhon D, Ellis‑Davies GCR, Frontera J, de Brito Van Velze M, Lourenço J, Murillo A, Luján R, Casado M, Perez‑Otaño I, Bacci A, Popa D, Paoletti P, Rebola N
Neuron. 2022 Aug 3. 110(15):2438-2454.e8.
Functional abnormalities in the cerebello-thalamic pathways in a mouse model of DYT25 dystonia.
Aïssa HB, Sala RW, Georgescu Margarint EL, Frontera JL, Varani AP, Menardy F, Pelosi A, Hervé D, Léna C, Popa D
Elife. 2022 Jun 14. 11.
Cerebellar stimulation prevents Levodopa-induced dyskinesia in mice and normalizes activity in a motor network.
Coutant B, Frontera JL, Perrin E, Combes A, Tarpin T, Menardy F, Mailhes‑Hamon C, Perez S, Degos B, Venance L, Léna C, Popa D
Nat Commun. 2022 Jun 9. 13(1):3211.
Diversity and ecological footprint of Global Ocean RNA viruses.
Dominguez‑Huerta G, Zayed AA, Wainaina JM, Guo J, Tian F, Pratama AA, Bolduc B, Mohssen M, Zablocki O, Pelletier E, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J, Bowler C, Eveillard D, Guidi L, Karsenti E, Kuhn JH, Ogata H, Wincker P, Culley A, Chaffron S, Sullivan MB
Science. 2022 Jun 10. 376(6598):1202-1208.
Genome-wide mapping of individual replication fork velocities using nanopore sequencing.
Theulot B, Lacroix L, Arbona JM, Millot GA, Jean E, Cruaud C, Pellet J, Proux F, Hennion M, Engelen S, Lemainque A, Audit B, Hyrien O, Le Tallec B
Nat Commun. 2022 Jun 8. 13(1):3295.
Mafa-dependent GABAergic activity promotes mouse neonatal apneas.
Lecoin L, Dempsey B, Garancher A, Bourane S, Ruffault PL, Morin‑Surun MP, Rocques N, Goulding M, Eychène A, Pouponnot C, Fortin G, Champagnat J
Nat Commun. 2022 Jun 7. 13(1):3284.
Macroevolutionary dynamics of climatic niche space.
Quintero I, Suchard MA, Jetz W
Proc Biol Sci. 2022 May 25. 289(1975):20220091.
Erratum: Author Correction: Malaria elimination on Hainan Island despite climate change.
Tian H, Li N, Li Y, Kraemer MUG, Tan H, Liu Y, Li Y, Wang B, Wu P, Cazelles B, Lourenço J, Gao D, Sun D, Song W, Li Y, Pybus OG, Wang G, Dye C
Commun Med (Lond). 2022. 2:22.
Malaria elimination on Hainan Island despite climate change.
Tian H, Li N, Li Y, Kraemer MUG, Tan H, Liu Y, Li Y, Wang B, Wu P, Cazelles B, Lourenço J, Gao D, Sun D, Song W, Li Y, Pybus OG, Wang G, Dye C
Commun Med (Lond). 2022. 2:12.
Modified climbing fiber/Purkinje cell synaptic connectivity in the cerebellum of the neonatal phencyclidine model of schizophrenia.
Veleanu M, Urrieta‑Chávez B, Sigoillot SM, Paul MA, Usardi A, Iyer K, Delagrange M, Doyle JP, Heintz N, Bécamel C, Selimi F
Proc Natl Acad Sci U S A. 2022 May 24. 119(21):e2122544119.
A unique cerebellar pattern of microglia activation in a mouse model of encephalopathy of prematurity.
Klein L, Van Steenwinckel J, Fleiss B, Scheuer T, Bührer C, Faivre V, Lemoine S, Blugeon C, Schwendimann L, Csaba Z, Bokobza C, Vousden DA, Lerch JP, Vernon AC, Gressens P, Schmitz T
Glia. 2022 Sep. 70(9):1699-1719.
RSAT 2022: regulatory sequence analysis tools.
Santana‑Garcia W, Castro‑Mondragon JA, Padilla‑Gálvez M, Nguyen NTT, Elizondo‑Salas A, Ksouri N, Gerbes F, Thieffry D, Vincens P, Contreras‑Moreira B, van Helden J, Thomas‑Chollier M, Medina‑Rivera A
Nucleic Acids Res. 2022 Jul 5. 50(W1):W670-W676.
Environmental cues from neural crest derivatives act as metastatic triggers in an embryonic neuroblastoma model.
Ben Amar D, Thoinet K, Villalard B, Imbaud O, Costechareyre C, Jarrosson L, Reynaud F, Novion Ducassou J, Couté Y, Brunet JF, Combaret V, Corradini N, Delloye‑Bourgeois C, Castellani V
Nat Commun. 2022 May 10. 13(1):2549.
FORK-seq: Single-Molecule Profiling of DNA Replication.
Hennion M, Theulot B, Arbona JM, Audit B, Hyrien O
Methods Mol Biol. 2022. 2477:107-128.
Classification of non-coding variants with high pathogenic impact.
Moyon L, Berthelot C, Louis A, Nguyen NTT, Roest Crollius H
PLoS Genet. 2022 Apr. 18(4):e1010191.
Molecular biology for green recovery-A call for action.
Rodríguez‑Martínez M, Nielsen J, Dupont S, Vamathevan J, Glover BJ, Crosswell LC, Rouse B, Luisi BF, Bowler C, Gasser SM, Arendt D, Erb TJ, de Lorenzo V, Heard E, Patil KR
PLoS Biol. 2022 Apr. 20(4):e3001623.
Analysing diversification dynamics using barcoding data: The case of an obligate mycorrhizal symbiont.
Perez‑Lamarque B, Öpik M, Maliet O, Afonso Silva AC, Selosse MA, Martos F, Morlon H
Mol Ecol. 2022 Jun. 31(12):3496-3512.
Astroblastomas exhibit radial glia stem cell lineages and differential expression of imprinted and X-inactivation escape genes.
Lehman NL, Spassky N, Sak M, Webb A, Zumbar CT, Usubalieva A, Alkhateeb KJ, McElroy JP, Maclean KH, Fadda P, Liu T, Gangalapudi V, Carver J, Abdullaev Z, Timmers C, Parker JR, Pierson CR, Mobley BC, Gokden M, Hattab EM, Parrett T, Cooke RX, Lehman TD, Costinean S, Parwani A, Williams BJ, Jensen RL, Aldape K, Mistry AM
Nat Commun. 2022 Apr 19. 13(1):2083.
Step by step: cells with multiple functions in cortical circuit assembly.
Cossart R, Garel S
Nat Rev Neurosci. 2022 Jul. 23(7):395-410.
Dynamic interplay between thalamic activity and Cajal-Retzius cells regulates the wiring of cortical layer 1.
Genescu I, Aníbal‑Martínez M, Kouskoff V, Chenouard N, Mailhes‑Hamon C, Cartonnet H, Lokmane L, Rijli FM, López‑Bendito G, Gambino F, Garel S
Cell Rep. 2022 Apr 12. 39(2):110667.
The relationship between rising temperatures and malaria incidence in Hainan, China, from 1984 to 2010: a longitudinal cohort study.
Wang Z, Liu Y, Li Y, Wang G, Lourenço J, Kraemer M, He Q, Cazelles B, Li Y, Wang R, Gao D, Li Y, Song W, Sun D, Dong L, Pybus OG, Stenseth NC, Tian H
Lancet Planet Health. 2022 Apr. 6(4):e350-e358.
Best practices in metabarcoding of fungi: From experimental design to results.
Tedersoo L, Bahram M, Zinger L, Nilsson RH, Kennedy PG, Yang T, Anslan S, Mikryukov V
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Amber Suppression Technology for Mapping Site-specific Viral-host Protein Interactions in Mammalian Cells.
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Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study.
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Author Correction: HR-Bac, a toolbox based on homologous recombination for expression, screening and production of multiprotein complexes using the baculovirus expression system.
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Activity-dependent modulation of NMDA receptors by endogenous zinc shapes dendritic function in cortical neurons.
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Discovery of a genetic module essential for assigning left-right asymmetry in humans and ancestral vertebrates.
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A holobiont view of island biogeography: Unravelling patterns driving the nascent diversification of a Hawaiian spider and its microbial associates.
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Hepatitis C virus core protein uses triacylglycerols to fold onto the endoplasmic reticulum membrane.
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The Waiting Room Hypothesis revisited by orchids: were orchid mycorrhizal fungi recruited among root endophytes?
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Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean.
Delmont TO, Pierella Karlusich JJ, Veseli I, Fuessel J, Eren AM, Foster RA, Bowler C, Wincker P, Pelletier E
ISME J. 2022 Apr. 16(4):927-936.
Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation.
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Positive allosteric modulation of NMDA receptors: mechanisms, physiological impact and therapeutic potential.
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Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation.
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