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Publications

2013

Neurodegeneration, neurogenesis, and oxidative stress.
Santos R, Ruiz de Almodóvar C, Bulteau AL, Gomes CM
Oxid Med Cell Longev. 2013. 2013:730581.

Computing the length of the shortest telomere in the nucleus.
Duc KD, Holcman D
Phys Rev Lett. 2013 Nov 27. 111(22):228104.

Dynamic micro-organization of P2X7 receptors revealed by PALM based single particle tracking.
Shrivastava AN, Rodriguez PC, Triller A, Renner M
Front Cell Neurosci. 2013. 7:232.

T-type channel blockade impairs long-term potentiation at the parallel fiber-Purkinje cell synapse and cerebellar learning.
Ly R, Bouvier G, Schonewille M, Arabo A, Rondi‑Reig L, Léna C, Casado M, De Zeeuw CI, Feltz A
Proc Natl Acad Sci U S A. 2013 Dec 10. 110(50):20302-7.

Integrative modelling of the influence of MAPK network on cancer cell fate decision.
Grieco L, Calzone L, Bernard‑Pierrot I, Radvanyi F, Kahn‑Perlès B, Thieffry D
PLoS Comput Biol. 2013 Oct. 9(10):e1003286.

Bioprospecting marine plankton.
Abida H, Ruchaud S, Rios L, Humeau A, Probert I, De Vargas C, Bach S, Bowler C
Mar Drugs. 2013 Nov 14. 11(11):4594-611.

Detection of single photons by toad and mouse rods.
Reingruber J, Pahlberg J, Woodruff ML, Sampath AP, Fain GL, Holcman D
Proc Natl Acad Sci U S A. 2013 Nov 26. 110(48):19378-83.

From simple bacterial and archaeal replicons to replication N/U-domains.
Hyrien O, Rappailles A, Guilbaud G, Baker A, Chen CL, Goldar A, Petryk N, Kahli M, Ma E, d’Aubenton‑Carafa Y, Audit B, Thermes C, Arneodo A
J Mol Biol. 2013 Nov 29. 425(23):4673-89.

Cytosolic transmitter concentration regulates vesicle cycling at hippocampal GABAergic terminals.
Wang L, Tu P, Bonet L, Aubrey KR, Supplisson S
Neuron. 2013 Oct 2. 80(1):143-58.

Activity-dependent regulation of the K/Cl transporter KCC2 membrane diffusion, clustering, and function in hippocampal neurons.
Chamma I, Heubl M, Chevy Q, Renner M, Moutkine I, Eugène E, Poncer JC, Lévi S
J Neurosci. 2013 Sep 25. 33(39):15488-503.

Dissection of a Krox20 positive feedback loop driving cell fate choices in hindbrain patterning.
Bouchoucha YX, Reingruber J, Labalette C, Wassef MA, Thierion E, Desmarquet‑Trin Dinh C, Holcman D, Gilardi‑Hebenstreit P, Charnay P
Mol Syst Biol. 2013. 9:690.

β-amyloid and ATP-induced diffusional trapping of astrocyte and neuronal metabotropic glutamate type-5 receptors.
Shrivastava AN, Kowalewski JM, Renner M, Bousset L, Koulakoff A, Melki R, Giaume C, Triller A
Glia. 2013 Oct. 61(10):1673-86.

Quantitative nanoscopy of inhibitory synapses : counting gephyrin molecules and receptor binding sites.
Specht CG, Izeddin I, Rodriguez PC, El Beheiry M, Rostaing P, Darzacq X, Dahan M, Triller A
Neuron. 2013 Jul 24. 79(2):308-21.

The first mecp2-null zebrafish model shows altered motor behaviors.
Pietri T, Roman AC, Guyon N, Romano SA, Washbourne P, Moens CB, de Polavieja GG, Sumbre G
Front Neural Circuits. 2013. 7:118.

DNA in motion during double-strand break repair.
Miné‑Hattab J, Rothstein R
Trends Cell Biol. 2013 Nov. 23(11):529-36.

Differential control of thrombospondin over synaptic glycine and AMPA receptors in spinal cord neurons.
Hennekinne L, Colasse S, Triller A, Renner M
J Neurosci. 2013 Jul 10. 33(28):11432-9.

Real-time dynamics of RNA polymerase II clustering in live human cells.
Cisse II, Izeddin I, Causse SZ, Boudarene L, Senecal A, Muresan L, Dugast‑Darzacq C, Hajj B, Dahan M, Darzacq X
Science. 2013 Aug 9. 341(6146):664-7.

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum.
Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O’Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen AE, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L
Nat Commun. 2013. 4:2091.

Control of flux by narrow passages and hidden targets in cellular biology.
Holcman D, Schuss Z
Rep Prog Phys. 2013 Jul. 76(7):074601.

DNA topoisomerase IIα controls replication origin cluster licensing and firing time in Xenopus egg extracts.
Gaggioli V, Le Viet B, Germe T, Hyrien O
Nucleic Acids Res. 2013 Aug. 41(15):7313-31.

Egr-1 induction provides a genetic response to food aversion in zebrafish.
Boyer B, Ernest S, Rosa F
Front Behav Neurosci. 2013. 7:51.

Unraveling novel features hidden in superresolution microscopy data.
Holcman D
Commun Integr Biol. 2013 May 1. 6(3):e23893.

NMDA receptor subunit diversity : impact on receptor properties, synaptic plasticity and disease.
Paoletti P, Bellone C, Zhou Q
Nat Rev Neurosci. 2013 Jun. 14(6):383-400.

Ancient origin of somatic and visceral neurons.
Nomaksteinsky M, Kassabov S, Chettouh Z, Stoeklé HC, Bonnaud L, Fortin G, Kandel ER, Brunet JF
BMC Biol. 2013 Apr 30. 11:53.

Sensory map transfer to the neocortex relies on pretarget ordering of thalamic axons.
Lokmane L, Proville R, Narboux‑Nême N, Györy I, Keita M, Mailhes C, Léna C, Gaspar P, Grosschedl R, Garel S
Curr Biol. 2013 May 6. 23(9):810-6.

A Phox2b ::FLPo transgenic mouse line suitable for intersectional genetics.
Hirsch MR, d’Autréaux F, Dymecki SM, Brunet JF, Goridis C
Genesis. 2013 Jul. 51(7):506-14.

Functional role of the cerebellum in gamma-band synchronization of the sensory and motor cortices.
Popa D, Spolidoro M, Proville RD, Guyon N, Belliveau L, Léna C
J Neurosci. 2013 Apr 10. 33(15):6552-6.

Transcriptome-wide identification of RNA binding sites by CLIP-seq.
Murigneux V, Saulière J, Roest Crollius H, Le Hir H
Methods. 2013 Sep 1. 63(1):32-40.

Microglial control of neuronal activity.
Béchade C, Cantaut‑Belarif Y, Bessis A
Front Cell Neurosci. 2013. 7:32.

EJC core component MLN51 interacts with eIF3 and activates translation.
Chazal PE, Daguenet E, Wendling C, Ulryck N, Tomasetto C, Sargueil B, Le Hir H
Proc Natl Acad Sci U S A. 2013 Apr 9. 110(15):5903-8.

Pathfinding of corticothalamic axons relies on a rendezvous with thalamic projections.
Deck M, Lokmane L, Chauvet S, Mailhes C, Keita M, Niquille M, Yoshida M, Yoshida Y, Lebrand C, Mann F, Grove EA, Garel S
Neuron. 2013 Feb 6. 77(3):472-84.

A spike of electrodiffusion reaches metabotropic receptors.
Schwartz E, Barbour B
Neuron. 2013 Feb 6. 77(3):381-4.

The transcription factor Vox represses endoderm development by interacting with Casanova and Pou2.
Zhao J, Lambert G, Meijer AH, Rosa FM
Development. 2013 Mar. 140(5):1090-9.

Expanding the genetic code in Xenopus laevis oocytes.
Ye S, Riou M, Carvalho S, Paoletti P
Chembiochem. 2013 Jan 21. 14(2):230-5.

Tight intramolecular regulation of the human Upf1 helicase by its N- and C-terminal domains.
Fiorini F, Boudvillain M, Le Hir H
Nucleic Acids Res. 2013 Feb 1. 41(4):2404-15.

CTD serine-2 plays a critical role in splicing and termination factor recruitment to RNA polymerase II in vivo.
Gu B, Eick D, Bensaude O
Nucleic Acids Res. 2013 Feb 1. 41(3):1591-603.

Genomicus : five genome browsers for comparative genomics in eukaryota.
Louis A, Muffato M, Roest Crollius H
Nucleic Acids Res. 2013 Jan. 41(Database issue):D700-5.

Evolutionary entropy predicts the outcome of selection : Competition for resources that vary in abundance and diversity.
Demetrius L, Legendre S
Theor Popul Biol. 2013 Feb. 83:39-54.

Ablation of Egr2-positive cells in male mouse anterior pituitary leads to atypical isolated GH deficiency.
Bouchoucha YX, Charnay P, Gilardi‑Hebenstreit P
Endocrinology. 2013 Jan. 154(1):270-82.

Emerging role for RNA-based regulation in plant immunity.
Staiger D, Korneli C, Lummer M, Navarro L
New Phytol. 2013 Jan. 197(2):394-404.

Developing a sense of taste.
Kapsimali M, Barlow LA
Semin Cell Dev Biol. 2013 Mar. 24(3):200-9.

Eco-evolutionary feedbacks, adaptive dynamics and evolutionary rescue theory.
Ferriere R, Legendre S
Philos Trans R Soc Lond B Biol Sci. 2013 Jan 19. 368(1610):20120081.

Evolutionary rescue : an emerging focus at the intersection between ecology and evolution.
Gonzalez A, Ronce O, Ferriere R, Hochberg ME
Philos Trans R Soc Lond B Biol Sci. 2013 Jan 19. 368(1610):20120404.

Fast multicolor 3D imaging using aberration-corrected multifocus microscopy.
Abrahamsson S, Chen J, Hajj B, Stallinga S, Katsov AY, Wisniewski J, Mizuguchi G, Soule P, Mueller F, Dugast Darzacq C, Darzacq X, Wu C, Bargmann CI, Agard DA, Dahan M, Gustafsson MG
Nat Methods. 2013 Jan. 10(1):60-3.

Visualization of structural changes accompanying activation of N-methyl-D-aspartate (NMDA) receptors using fast-scan atomic force microscopy imaging.
Suzuki Y, Goetze TA, Stroebel D, Balasuriya D, Yoshimura SH, Henderson RM, Paoletti P, Takeyasu K, Edwardson JM
J Biol Chem. 2013 Jan 11. 288(2):778-84.

Experimental evidence for density-dependent regulation and selection on Trinidadian guppy life histories.
Bassar RD, Lopez‑Sepulcre A, Reznick DN, Travis J
Am Nat. 2013 Jan. 181(1):25-38.

Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm.
Audit B, Baker A, Chen CL, Rappailles A, Guilbaud G, Julienne H, Goldar A, d’Aubenton‑Carafa Y, Hyrien O, Thermes C, Arneodo A
Nat Protoc. 2013 Jan. 8(1):98-110.

AUREOCHROME1a-mediated induction of the diatom-specific cyclin dsCYC2 controls the onset of cell division in diatoms (Phaeodactylum tricornutum).
Huysman MJ, Fortunato AE, Matthijs M, Costa BS, Vanderhaeghen R, Van den Daele H, Sachse M, Inzé D, Bowler C, Kroth PG, Wilhelm C, Falciatore A, Vyverman W, De Veylder L
Plant Cell. 2013 Jan. 25(1):215-28.

Species richness, distribution and genetic diversity of Caenorhabditis nematodes in a remote tropical rainforest.
Félix MA, Jovelin R, Ferrari C, Han S, Cho YR, Andersen EC, Cutter AD, Braendle C
BMC Evol Biol. 2013 Jan 12. 13:10.

Robustness and epistasis in the C. elegans vulval signaling network revealed by pathway dosage modulation.
Barkoulas M, van Zon JS, Milloz J, van Oudenaarden A, Félix MA
Dev Cell. 2013 Jan 14. 24(1):64-75.

Egr-2 transcription factor is required for Blimp-1-mediated IL-10 production in IL-27-stimulated CD4+ T cells.
Iwasaki Y, Fujio K, Okamura T, Yanai A, Sumitomo S, Shoda H, Tamura T, Yoshida H, Charnay P, Yamamoto K
Eur J Immunol. 2013 Apr. 43(4):1063-73.

How to measure maturation : a comparison of probabilistic methods used to test for genotypic variation and plasticity in the decision to mature.
Harney E, Van Dooren TJ, Paterson S, Plaistow SJ
Evolution. 2013 Feb. 67(2):525-38.

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism.
Atanasova L, Le Crom S, Gruber S, Coulpier F, Seidl‑Seiboth V, Kubicek CP, Druzhinina IS
BMC Genomics. 2013 Feb 22. 14:121.

A mutualistic approach to morality : the evolution of fairness by partner choice.
Baumard N, André JB, Sperber D
Behav Brain Sci. 2013 Feb. 36(1):59-78.

Allosteric signaling and dynamics of the clamshell-like NMDA receptor GluN1 N-terminal domain.
Zhu S, Stroebel D, Yao CA, Taly A, Paoletti P
Nat Struct Mol Biol. 2013 Apr. 20(4):477-85.

On circuit functionality in Boolean networks.
Comet JP, Noual M, Richard A, Aracena J, Calzone L, Demongeot J, Kaufman M, Naldi A, Snoussi el H, Thieffry D
Bull Math Biol. 2013 Jun. 75(6):906-19.

FISH-quant : automatic counting of transcripts in 3D FISH images.
Mueller F, Senecal A, Tantale K, Marie‑Nelly H, Ly N, Collin O, Basyuk E, Bertrand E, Darzacq X, Zimmer C
Nat Methods. 2013 Apr. 10(4):277-8.

Partner choice, fairness, and the extension of morality.
Baumard N, André JB, Sperber D
Behav Brain Sci. 2013 Feb. 36(1):102-13.

Transcriptional and epigenetic signatures of zygotic genome activation during early Drosophila embryogenesis.
Darbo E, Herrmann C, Lecuit T, Thieffry D, van Helden J
BMC Genomics. 2013 Apr 5. 14:226.

Spatial telomere organization and clustering in yeast Saccharomyces cerevisiae nucleus is generated by a random dynamics of aggregation-dissociation.
Hozé N, Ruault M, Amoruso C, Taddei A, Holcman D
Mol Biol Cell. 2013 Jun. 24(11):1791-800, S1-10.

Fast functional imaging of multiple brain regions in intact zebrafish larvae using selective plane illumination microscopy.
Panier T, Romano SA, Olive R, Pietri T, Sumbre G, Candelier R, Debrégeas G
Front Neural Circuits. 2013. 7:65.

A role for vesicular glutamate transporter 1 in synaptic vesicle clustering and mobility.
Siksou L, Silm K, Biesemann C, Nehring RB, Wojcik SM, Triller A, El Mestikawy S, Marty S, Herzog E
Eur J Neurosci. 2013 May. 37(10):1631-42.

Nuclear retention of the transcription factor NLP7 orchestrates the early response to nitrate in plants.
Marchive C, Roudier F, Castaings L, Bréhaut V, Blondet E, Colot V, Meyer C, Krapp A
Nat Commun. 2013. 4:1713.

Extensive natural epigenetic variation at a de novo originated gene.
Silveira AB, Trontin C, Cortijo S, Barau J, Del Bem LE, Loudet O, Colot V, Vincentz M
PLoS Genet. 2013 Apr. 9(4):e1003437.

The zebrafish reference genome sequence and its relationship to the human genome.
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra‑Assunção JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida‑King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Elliot D, Threadgold G, Harden G, Ware D, Begum S, Mortimore B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Lloyd C, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi‑Mohammadi M, Barr L, Martin S, Wray P, Ellington A, Matthews N, Ellwood M, Woodmansey R, Clark G, Cooper J, Tromans A, Grafham D, Skuce C, Pandian R, Andrews R, Harrison E, Kimberley A, Garnett J, Fosker N, Hall R, Garner P, Kelly D, Bird C, Palmer S, Gehring I, Berger A, Dooley CM, Ersan‑Ürün Z, Eser C, Geiger H, Geisler M, Karotki L, Kirn A, Konantz J, Konantz M, Oberländer M, Rudolph‑Geiger S, Teucke M, Lanz C, Raddatz G, Osoegawa K, Zhu B, Rapp A, Widaa S, Langford C, Yang F, Schuster SC, Carter NP, Harrow J, Ning Z, Herrero J, Searle SM, Enright A, Geisler R, Plasterk RH, Lee C, Westerfield M, de Jong PJ, Zon LI, Postlethwait JH, Nüsslein‑Volhard C, Hubbard TJ, Roest Crollius H, Rogers J, Stemple DL
Nature. 2013 Apr 25. 496(7446):498-503.

Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics.
Aguilée R, Claessen D, Lambert A
Evolution. 2013 May. 67(5):1291-306.

Can we detect oceanic biodiversity hotspots from space ?
De Monte S, Soccodato A, Alvain S, d’Ovidio F
ISME J. 2013 Oct. 7(10):2054-6.

Cdc45 is a critical effector of myc-dependent DNA replication stress.
Srinivasan SV, Dominguez‑Sola D, Wang LC, Hyrien O, Gautier J
Cell Rep. 2013 May 30. 3(5):1629-39.

A blue-absorbing photolabile protecting group for in vivo chromatically orthogonal photoactivation.
Fournier L, Gauron C, Xu L, Aujard I, Le Saux T, Gagey‑Eilstein N, Maurin S, Dubruille S, Baudin JB, Bensimon D, Volovitch M, Vriz S, Jullien L
ACS Chem Biol. 2013 Jul 19. 8(7):1528-36.

Gene expression is circular : factors for mRNA degradation also foster mRNA synthesis.
Haimovich G, Medina DA, Causse SZ, Garber M, Millán‑Zambrano G, Barkai O, Chávez S, Pérez‑Ortín JE, Darzacq X, Choder M
Cell. 2013 May 23. 153(5):1000-11.

Structure of an A-form RNA duplex obtained by degradation of 6S RNA in a crystallization droplet.
Kondo J, Dock‑Bregeon AC, Willkomm DK, Hartmann RK, Westhof E
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun. 69(Pt 6):634-9.

The length of the shortest telomere as the major determinant of the onset of replicative senescence.
Xu Z, Duc KD, Holcman D, Teixeira MT
Genetics. 2013 Aug. 194(4):847-57.

Beyond lifetime reproductive success : the posthumous reproductive dynamics of male Trinidadian guppies.
López‑Sepulcre A, Gordon SP, Paterson IG, Bentzen P, Reznick DN
Proc Biol Sci. 2013 Jul 22. 280(1763):20131116.

Atmospheric moisture variability and transmission of hemorrhagic fever with renal syndrome in Changsha City, Mainland China, 1991-2010.
Xiao H, Tian HY, Cazelles B, Li XJ, Tong SL, Gao LD, Qin JX, Lin XL, Liu HN, Zhang XX
PLoS Negl Trop Dis. 2013. 7(6):e2260.

Pan genome of the phytoplankton Emiliania underpins its global distribution.
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G, Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV
Nature. 2013 Jul 11. 499(7457):209-13.

Optical control and study of biological processes at the single-cell level in a live organism.
Feng Z, Zhang W, Xu J, Gauron C, Ducos B, Vriz S, Volovitch M, Jullien L, Weiss S, Bensimon D
Rep Prog Phys. 2013 Jul. 76(7):072601.

Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome.
Sani E, Herzyk P, Perrella G, Colot V, Amtmann A
Genome Biol. 2013 Jun 14. 14(6):R59.

Ecological emergence of thermal clines in body size.
Edeline E, Lacroix G, Delire C, Poulet N, Legendre S
Glob Chang Biol. 2013 Oct. 19(10):3062-8.

Depletion of microglia from primary cellular cultures.
Pont‑Lezica L, Colasse S, Bessis A
Methods Mol Biol. 2013. 1041:55-61.

Proteomic analysis of the SH2 domain-containing leukocyte protein of 76 kDa (SLP76) interactome in resting and activated primary mast cells [corrected].
Bounab Y, Hesse AM, Iannascoli B, Grieco L, Couté Y, Niarakis A, Roncagalli R, Lie E, Lam KP, Demangel C, Thieffry D, Garin J, Malissen B, Daëron M
Mol Cell Proteomics. 2013 Oct. 12(10):2874-89.

Dynamical modeling and analysis of large cellular regulatory networks.
Bérenguier D, Chaouiya C, Monteiro PT, Naldi A, Remy E, Thieffry D, Tichit L
Chaos. 2013 Jun. 23(2):025114.

DAP12 and CD11b contribute to the microglial-induced death of dopaminergic neurons in vitro but not in vivo in the MPTP mouse model of Parkinson’s disease.
Kinugawa K, Monnet Y, Béchade C, Alvarez‑Fischer D, Hirsch EC, Bessis A, Hunot S
J Neuroinflammation. 2013 Jul 11. 10:82.

Reconstructing de novo silencing of an active plant retrotransposon.
Marí‑Ordóñez A, Marchais A, Etcheverry M, Martin A, Colot V, Voinnet O
Nat Genet. 2013 Sep. 45(9):1029-39.

Cell-cell contacts confine public goods diffusion inside Pseudomonas aeruginosa clonal microcolonies.
Julou T, Mora T, Guillon L, Croquette V, Schalk IJ, Bensimon D, Desprat N
Proc Natl Acad Sci U S A. 2013 Jul 30. 110(31):12577-82.

Density-dependent life history and the dynamics of small populations.
Mugabo M, Perret S, Legendre S, Le Galliard JF
J Anim Ecol. 2013 Nov. 82(6):1227-39.

Logical modelling of Drosophila signalling pathways.
Mbodj A, Junion G, Brun C, Furlong EE, Thieffry D
Mol Biosyst. 2013 Sep. 9(9):2248-58.

Granule cell ascending axon excitatory synapses onto Golgi cells implement a potent feedback circuit in the cerebellar granular layer.
Cesana E, Pietrajtis K, Bidoret C, Isope P, D’Angelo E, Dieudonné S, Forti L
J Neurosci. 2013 Jul 24. 33(30):12430-46.

Rapid and sustained autologous neutralizing response leading to early spontaneous recovery after HCV infection.
Esteban‑Riesco L, Depaulis F, Moreau A, Bacq Y, Dubois F, Goudeau A, Gaudy‑Graffin C
Virology. 2013 Sep. 444(1-2):90-9.

Tubulin glycylases and glutamylases have distinct functions in stabilization and motility of ependymal cilia.
Bosch Grau M, Gonzalez Curto G, Rocha C, Magiera MM, Marques Sousa P, Giordano T, Spassky N, Janke C
J Cell Biol. 2013 Aug 5. 202(3):441-51.

Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor.
Fu Y, Kawabe A, Etcheverry M, Ito T, Toyoda A, Fujiyama A, Colot V, Tarutani Y, Kakutani T
EMBO J. 2013 Aug 28. 32(17):2407-17.

Evaluation of MeDIP-chip in the context of whole-genome bisulfite sequencing (WGBS-seq) in Arabidopsis.
Wardenaar R, Liu H, Colot V, Colomé‑Tatché M, Johannes F
Methods Mol Biol. 2013. 1067:203-24.

Monitoring tectal neuronal activities and motor behavior in zebrafish larvae.
Sumbre G, Poo MM
Cold Spring Harb Protoc. 2013 Sep 1. 2013(9):873-9.

RecG and UvsW catalyse robust DNA rewinding critical for stalled DNA replication fork rescue.
Manosas M, Perumal SK, Bianco PR, Ritort F, Benkovic SJ, Croquette V
Nat Commun. 2013. 4:2368.

Clusters of cerebellar Purkinje cells control their afferent climbing fiber discharge.
Chaumont J, Guyon N, Valera AM, Dugué GP, Popa D, Marcaggi P, Gautheron V, Reibel‑Foisset S, Dieudonné S, Stephan A, Barrot M, Cassel JC, Dupont JL, Doussau F, Poulain B, Selimi F, Léna C, Isope P
Proc Natl Acad Sci U S A. 2013 Oct 1. 110(40):16223-8.

A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms.
Thomas‑Chollier M, Watson LC, Cooper SB, Pufall MA, Liu JS, Borzym K, Vingron M, Yamamoto KR, Meijsing SH
Proc Natl Acad Sci U S A. 2013 Oct 29. 110(44):17826-31.

The dynamic synapse.
Choquet D, Triller A
Neuron. 2013 Oct 30. 80(3):691-703.

Two Leucobacter strains exert complementary virulence on Caenorhabditis including death by worm-star formation.
Hodgkin J, Félix MA, Clark LC, Stroud D, Gravato‑Nobre MJ
Curr Biol. 2013 Nov 4. 23(21):2157-61.

High-frequency promoter firing links THO complex function to heavy chromatin formation.
Mouaikel J, Causse SZ, Rougemaille M, Daubenton‑Carafa Y, Blugeon C, Lemoine S, Devaux F, Darzacq X, Libri D
Cell Rep. 2013 Nov 27. 5(4):1082-94.

Crystal structure of the human eIF4AIII-CWC22 complex shows how a DEAD-box protein is inhibited by a MIF4G domain.
Buchwald G, Schüssler S, Basquin C, Le Hir H, Conti E
Proc Natl Acad Sci U S A. 2013 Nov 26. 110(48):E4611-8.

Modeling the structure of RNA molecules with small-angle X-ray scattering data.
Gajda MJ, Martinez Zapien D, Uchikawa E, Dock‑Bregeon AC
PLoS One. 2013. 8(11):e78007.

Does homologous reinfection drive multiple-wave influenza outbreaks ? Accounting for immunodynamics in epidemiological models.
Camacho A, Cazelles B
Epidemics. 2013 Dec. 5(4):187-96.

Epigenetic diversity increases the productivity and stability of plant populations.
Latzel V, Allan E, Bortolini Silveira A, Colot V, Fischer M, Bossdorf O
Nat Commun. 2013. 4:2875.

Epigenetics of ciliates.
Chalker DL, Meyer E, Mochizuki K
Cold Spring Harb Perspect Biol. 2013 Dec 1. 5(12):a017764.

SBML qualitative models : a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
Chaouiya C, Bérenguier D, Keating SM, Naldi A, van Iersel MP, Rodriguez N, Dräger A, Büchel F, Cokelaer T, Kowal B, Wicks B, Gonçalves E, Dorier J, Page M, Monteiro PT, von Kamp A, Xenarios I, de Jong H, Hucka M, Klamt S, Thieffry D, Le Novère N, Saez‑Rodriguez J, Helikar T
BMC Syst Biol. 2013 Dec 10. 7:135.

Polymer model with long-range interactions : analysis and applications to the chromatin structure.
Amitai A, Holcman D
Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Nov. 88(5):052604.

Biological information : why we need a good measure and the challenges ahead.
van Baalen M
Interface Focus. 2013 Dec 6. 3(6):20130030.

Diffusing polymers in confined microdomains and estimation of chromosomal territory sizes from chromosome capture data.
Amitai A, Holcman D
Phys Rev Lett. 2013 Jun 14. 110(24):248105.

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense.
Yu A, Lepère G, Jay F, Wang J, Bapaume L, Wang Y, Abraham AL, Penterman J, Fischer RL, Voinnet O, Navarro L
Proc Natl Acad Sci U S A. 2013 Feb 5. 110(6):2389-94.

Epigenetic variation creates potential for evolution of plant phenotypic plasticity.
Zhang YY, Fischer M, Colot V, Bossdorf O
New Phytol. 2013 Jan. 197(1):314-22.

A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity.
Ashe A, Bélicard T, Le Pen J, Sarkies P, Frézal L, Lehrbach NJ, Félix MA, Miska EA
Elife. 2013 Oct 8. 2:e00994.

Crystal structure of the human eIF4AIII-CWC22 complex shows how a DEAD-box protein is inhibited by a MIF4G domain.
Buchwald G, Schüssler S, Basquin C, Le Hir H, Conti E
Proc Natl Acad Sci U S A. 2013 Nov 26. 110(48):E4611-8.

Kinetics of Diffusing Polymer Encounter in Confined Cellular Microdomains
AmitaiI A, Kupka I, Holcman D
Journal of Statistical Physics. 2013 Dec 13. 153(6):1107-1131.

Intermittent breeding and the dynamics of resource allocation to reproduction, growth and survival
Baron JP, Le Galliard JF, Ferrière R, Tully T
Functional Ecology. 2013 Jan 28. 27(1):173-183.

Physics of sinking and selection of plankton cell size
Sciascia R, De Monte S, Provenzale A
Physics Letters A. 2013 Feb 4. 377(6):467-472.

Ecological implications of eddy retention in the open ocean : a Lagrangian approach
D’Ovidio F, De Monte S, Della Penna A, Cotté C, Guinet C
Journal of Physics A : Mathematical and Theoretical. 2013 Jun 4. 46(25):254023.

Food-web aggregation, methodological and functional issues
Gauzens B, Legendre S, Lazzaro X, Lacroix G
OIKOS Synthesising Ecology. 2013 Apr 25. 122(11):1606-1615.

Reconstruction of Surface and Stochastic Dynamics from a Planar Projection of Trajectories
Hoze N, Schuss Z, Holcman D
SIAM Journal on Imaging Sciences. 2013 Dec 3. 6(4):2430-2449.