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Photolysis of a Caged, Fast-Equilibrating Glutamate Receptor Antagonist, MNI-Caged γ-D-Glutamyl-Glycine, to Investigate Transmitter Dynamics and Receptor Properties at Glutamatergic Synapses.
Palma‑Cerda F, Papageorgiou G, Barbour B, Auger C, Ogden D
Front Cell Neurosci. 2018. 12:465.

Ca2+-activated Cl- current ensures robust and reliable signal amplification in vertebrate olfactory receptor neurons.
Reisert J, Reingruber J
Proc Natl Acad Sci U S A. 2018 Dec 31.

The Latitudinal Diversity Gradient : Novel Understanding through Mechanistic Eco-evolutionary Models.
Pontarp M, Bunnefeld L, Cabral JS, Etienne RS, Fritz SA, Gillespie R, Graham CH, Hagen O, Hartig F, Huang S, Jansson R, Maliet O, Münkemüller T, Pellissier L, Rangel TF, Storch D, Wiegand T, Hurlbert AH
Trends Ecol Evol. 2018 Dec 24.

Cell biology and dynamics of Neuronal Na+/K+-ATPase in health and diseases.
Shrivastava AN, Triller A, Melki R
Neuropharmacology. 2018 Dec 11.

Heterogeneous Signaling at GABA and Glycine Co-releasing Terminals.
Aubrey KR, Supplisson S
Front Synaptic Neurosci. 2018. 10:40.

The Species Problem from the Modeler’s Point of View.
Manceau M, Lambert A
Bull Math Biol. 2018 Dec 7.

Transmission dynamics of re-emerging rabies in domestic dogs of rural China.
Tian H, Feng Y, Vrancken B, Cazelles B, Tan H, Gill MS, Yang Q, Li Y, Yang W, Zhang Y, Zhang Y, Lemey P, Pybus OG, Stenseth NC, Zhang H, Dellicour S
PLoS Pathog. 2018 Dec. 14(12):e1007392.

Comparative Transcriptomics Highlights New Features of the Iron Starvation Response in the Human Pathogen Candida glabrata.
Benchouaia M, Ripoche H, Sissoko M, Thiébaut A, Merhej J, Delaveau T, Fasseu L, Benaissa S, Lorieux G, Jourdren L, Le Crom S, Lelandais G, Corel E, Devaux F
Front Microbiol. 2018. 9:2689.

Macroscale fluorescence imaging against autofluorescence under ambient light.
Zhang R, Chouket R, Plamont MA, Kelemen Z, Espagne A, Tebo AG, Gautier A, Gissot L, Faure JD, Jullien L, Croquette V, Le Saux T
Light Sci Appl. 2018. 7:97.

BioLQM : A Java Toolkit for the Manipulation and Conversion of Logical Qualitative Models of Biological Networks.
Naldi A
Front Physiol. 2018. 9:1605.

Genome-wide identification of RETINOBLASTOMA RELATED 1 binding sites in Arabidopsis reveals novel DNA damage regulators.
Bouyer D, Heese M, Chen P, Harashima H, Roudier F, Grüttner C, Schnittger A
PLoS Genet. 2018 Nov. 14(11):e1007797.

Adaptation of proteins to the cold in Antarctic fish : A role for Methionine ?
Berthelot C, Clarke J, Desvignes T, Detrich HW 3rd, Flicek P, Peck LS, Peters M, Postlethwait JH, Clark MS
Genome Biol Evol. 2018 Nov 29.

Reconstruction of directed neuronal networks in a microfluidic device with asymmetric microchannels.
Courte J, Renault R, Jan A, Viovy JL, Peyrin JM, Villard C
Methods Cell Biol. 2018. 148:71-95.

Amphioxus functional genomics and the origins of vertebrate gene regulation.
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle‑Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera‑Ubeda C, Skvortsova K, Jimenez‑Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech‑Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito‑Gutiérrez È, Cañestro C, Castro F, D’Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez‑Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia‑Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez‑Skarmeta JL, Irimia M
Nature. 2018 Dec. 564(7734):64-70.

Microglial phenotypes in the human epileptic temporal lobe.
Morin‑Brureau M, Milior G, Royer J, Chali F, LeDuigou C, Savary E, Blugeon C, Jourdren L, Akbar D, Dupont S, Navarro V, Baulac M, Bielle F, Mathon B, Clemenceau S, Miles R
Brain. 2018 Dec 1. 141(12):3343-3360.

Oscillatory Cortical Activity in an Animal Model of Dystonia Caused by Cerebellar Dysfunction.
Georgescu EL, Georgescu IA, Zahiu CDM, Şteopoaie AR, Morozan VP, Pană AŞ, Zăgrean AM, Popa D
Front Cell Neurosci. 2018. 12:390.

Whole-Brain Neuronal Activity Displays Crackling Noise Dynamics.
Ponce‑Alvarez A, Jouary A, Privat M, Deco G, Sumbre G
Neuron. 2018 Dec 19. 100(6):1446-1459.e6.

Lacroix L
Bioinformatics. 2018 Nov 16.

Author Correction : Higher ambient synaptic glutamate at inhibitory versus excitatory neurons differentially impacts NMDA receptor activity.
Yao L, Grand T, Hanson JE, Paoletti P, Zhou Q
Nat Commun. 2018 Nov 15. 9(1):4887.

Adaptation of a Fungal Pathogen to Host Quantitative Resistance.
Frézal L, Jacqua G, Neema C
Front Plant Sci. 2018. 9:1554.

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise.
Schöne S, Bothe M, Einfeldt E, Borschiwer M, Benner P, Vingron M, Thomas‑Chollier M, Meijsing SH
PLoS Genet. 2018 Nov. 14(11):e1007793.

Author Correction : Clade-specific diversification dynamics of marine diatoms since the Jurassic.
Lewitus E, Bittner L, Malviya S, Bowler C, Morlon H
Nat Ecol Evol. 2018 Dec. 2(12):1993.

Unmasking GluN1/GluN3A excitatory glycine NMDA receptors.
Grand T, Abi Gerges S, David M, Diana MA, Paoletti P
Nat Commun. 2018 Nov 13. 9(1):4769.

Cerebellar learning using perturbations.
Bouvier G, Aljadeff J, Clopath C, Bimbard C, Ranft J, Blot A, Nadal JP, Brunel N, Hakim V, Barbour B
Elife. 2018 Nov 12. 7.

Active intermixing of indirect and direct neurons builds the striatal mosaic.
Tinterri A, Menardy F, Diana MA, Lokmane L, Keita M, Coulpier F, Lemoine S, Mailhes C, Mathieu B, Merchan‑Sala P, Campbell K, Gyory I, Grosschedl R, Popa D, Garel S
Nat Commun. 2018 Nov 9. 9(1):4725.

DNA methylation and gene expression alterations in zebrafish early-life stages exposed to the antibacterial agent triclosan.
Falisse E, Ducos B, Stockwell PA, Morison IM, Chatterjee A, Silvestre F
Environ Pollut. 2018 Dec. 243(Pt B):1867-1877.

An inter-dimer allosteric switch controls NMDA receptor activity.
Esmenjaud JB, Stroebel D, Chan K, Grand T, David M, Wollmuth LP, Taly A, Paoletti P
EMBO J. 2018 Nov 5.

Quantitative resistance to clubroot infection mediated by transgenerational epigenetic variation in Arabidopsis.
Liégard B, Baillet V, Etcheverry M, Joseph E, Lariagon C, Lemoine J, Evrard A, Colot V, Gravot A, Manzanares‑Dauleux MJ, Jubault M
New Phytol. 2018 Nov 4.

Fast confocal fluorescence imaging in freely behaving mice.
Dussaux C, Szabo V, Chastagnier Y, Fodor J, Léger JF, Bourdieu L, Perroy J, Ventalon C
Sci Rep. 2018 Nov 2. 8(1):16262.

Slower environmental change hinders adaptation from standing genetic variation.
Guzella TS, Dey S, Chelo IM, Pino‑Querido A, Pereira VF, Proulx SR, Teotónio H
PLoS Genet. 2018 Nov. 14(11):e1007731.

Clade-specific diversification dynamics of marine diatoms since the Jurassic.
Lewitus E, Bittner L, Malviya S, Bowler C, Morlon H
Nat Ecol Evol. 2018 Nov. 2(11):1715-1723.

Chromosome evolution at the origin of the ancestral vertebrate genome.
Sacerdot C, Louis A, Bon C, Berthelot C, Roest Crollius H
Genome Biol. 2018 Oct 17. 19(1):166.

Microglia and early brain development : An intimate journey.
Thion MS, Ginhoux F, Garel S
Science. 2018 Oct 12. 362(6411):185-189.

Comparative characterization of putative chitin deacetylases from Phaeodactylum tricornutum and Thalassiosira pseudonana highlights the potential for distinct chitin-based metabolic processes in diatoms.
Shao Z, Thomas Y, Hembach L, Xing X, Duan D, Moerschbacher BM, Bulone V, Tirichine L, Bowler C
New Phytol. 2018 Oct 4.

Higher ambient synaptic glutamate at inhibitory versus excitatory neurons differentially impacts NMDA receptor activity.
Yao L, Grand T, Hanson JE, Paoletti P, Zhou Q
Nat Commun. 2018 Oct 1. 9(1):4000.

Nonsense-mediated mRNA decay involves two distinct Upf1-bound complexes.
Dehecq M, Decourty L, Namane A, Proux C, Kanaan J, Le Hir H, Jacquier A, Saveanu C
EMBO J. 2018 Nov 2. 37(21).

Compartmental models for seasonal hyperendemic bacterial meningitis in the African meningitis belt.
Koutangni T, Crépey P, Woringer M, Porgho S, Bicaba BW, Tall H, Mueller JE
Epidemiol Infect. 2018 Sep 28:1-11.

Monitored eCLIP : high accuracy mapping of RNA-protein interactions.
Hocq R, Paternina J, Alasseur Q, Genovesio A, Le Hir H
Nucleic Acids Res. 2018 Nov 30. 46(21):11553-11565.

Multiple factors behind early diversification of skull morphology in the continental radiation of New World monkeys.
Aristide L, Bastide P, Dos Reis SF, Pires Dos Santos TM, Lopes RT, Perez SI
Evolution. 2018 Dec. 72(12):2697-2711.

Cross-exchange of B-vitamins underpins a mutualistic interaction between Ostreococcus tauri and Dinoroseobacter shibae.
Cooper MB, Kazamia E, Helliwell KE, Kudahl UJ, Sayer A, Wheeler GL, Smith AG
ISME J. 2018 Sep 18.

Single particle trajectories reveal active endoplasmic reticulum luminal flow.
Holcman D, Parutto P, Chambers JE, Fantham M, Young LJ, Marciniak SJ, Kaminski CF, Ron D, Avezov E
Nat Cell Biol. 2018 Oct. 20(10):1118-1125.

Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium.
Bischerour J, Bhullar S, Denby Wilkes C, Régnier V, Mathy N, Dubois E, Singh A, Swart E, Arnaiz O, Sperling L, Nowacki M, Bétermier M
Elife. 2018 Sep 18. 7.

Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.
Sardina JL, Collombet S, Tian TV, Gómez A, Di Stefano B, Berenguer C, Brumbaugh J, Stadhouders R, Segura‑Morales C, Gut M, Gut IG, Heath S, Aranda S, Di Croce L, Hochedlinger K, Thieffry D, Graf T
Cell Stem Cell. 2018 Nov 1. 23(5):727-741.e9.

UPF1-like helicase grip on nucleic acids dictates processivity.
Kanaan J, Raj S, Decourty L, Saveanu C, Croquette V, Le Hir H
Nat Commun. 2018 Sep 14. 9(1):3752.

Dual-layer transposon repression in heads of Drosophila melanogaster.
van den Beek M, da Silva B, Pouch J, Ali Chaouche MEA, Carré C, Antoniewski C
RNA. 2018 Dec. 24(12):1749-1760.

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom.
Murik O, Tirichine L, Prihoda J, Thomas Y, Araújo WL, Allen AE, Fernie AR, Bowler C
New Phytol. 2018 Sep 14.

Optogenetic stimulation of complex spatio-temporal activity patterns by acousto-optic light steering probes cerebellar granular layer integrative properties.
Hernandez O, Pietrajtis K, Mathieu B, Dieudonné S
Sci Rep. 2018 Sep 13. 8(1):13768.

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.
Wu X, Kabalane H, Kahli M, Petryk N, Laperrousaz B, Jaszczyszyn Y, Drillon G, Nicolini FE, Perot G, Robert A, Fund C, Chibon F, Xia R, Wiels J, Argoul F, Maguer‑Satta V, Arneodo A, Audit B, Hyrien O
Nucleic Acids Res. 2018 Nov 2. 46(19):10532.

Dengue modeling in rural Cambodia : Statistical performance versus epidemiological relevance.
Champagne C, Paul R, Ly S, Duong V, Leang R, Cazelles B
Epidemics. 2018 Aug 29.

DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.
Nassrallah A, Rougée M, Bourbousse C, Drevensek S, Fonseca S, Iniesto E, Ait‑Mohamed O, Deton‑Cabanillas AF, Zabulon G, Ahmed I, Stroebel D, Masson V, Lombard B, Eeckhout D, Gevaert K, Loew D, Genovesio A, Breyton C, de Jaeger G, Bowler C, Rubio V, Barneche F
Elife. 2018 Sep 7. 7.

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.
Wu X, Kabalane H, Kahli M, Petryk N, Laperrousaz B, Jaszczyszyn Y, Drillon G, Nicolini FE, Perot G, Robert A, Fund C, Chibon F, Xia R, Wiels J, Argoul F, Maguer‑Satta V, Arneodo A, Audit B, Hyrien O
Nucleic Acids Res. 2018 Nov 2. 46(19):10157-10172.

Trio GEF mediates RhoA activation downstream of Slit2 and coordinates telencephalic wiring.
Backer S, Lokmane L, Landragin C, Deck M, Garel S, Bloch‑Gallego E
Development. 2018 Oct 2. 145(19).

Cracking the Code of Biodiversity Responses to Past Climate Change.
Nogués‑Bravo D, Rodríguez‑Sánchez F, Orsini L, de Boer E, Jansson R, Morlon H, Fordham DA, Jackson ST
Trends Ecol Evol. 2018 Oct. 33(10):765-776.

A mating-type mutagenesis screen identifies a zinc-finger protein required for specific DNA excision events in Paramecium.
Bhullar S, Denby Wilkes C, Arnaiz O, Nowacki M, Sperling L, Meyer E
Nucleic Acids Res. 2018 Oct 12. 46(18):9550-9562.

Mapping the imprint of biotic interactions on β-diversity.
Ohlmann M, Mazel F, Chalmandrier L, Bec S, Coissac E, Gielly L, Pansu J, Schilling V, Taberlet P, Zinger L, Chave J, Thuiller W
Ecol Lett. 2018 Nov. 21(11):1660-1669.

Isolation and differential transcriptome of vascular smooth muscle cells and mid-capillary pericytes from the rat brain.
Chasseigneaux S, Moraca Y, Cochois‑Guégan V, Boulay AC, Gilbert A, Le Crom S, Blugeon C, Firmo C, Cisternino S, Laplanche JL, Curis E, Declèves X, Saubaméa B
Sci Rep. 2018 Aug 16. 8(1):12272.

Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models.
Cazelles B, Champagne C, Dureau J
PLoS Comput Biol. 2018 Aug. 14(8):e1006211.

Inferring Evolutionary Process From Neuroanatomical Data.
Lewitus E
Front Neuroanat. 2018. 12:54.

The gut microbiome is associated with behavioural task in honey bees.
Jones JC, Fruciano C, Marchant J, Hildebrand F, Forslund S, Bork P, Engel P, Hughes WOH
Insectes Soc. 2018. 65(3):419-429.

Voltage- and Branch-Specific Climbing Fiber Responses in Purkinje Cells.
Zang Y, Dieudonné S, De Schutter E
Cell Rep. 2018 Aug 7. 24(6):1536-1549.

The First 100 nm Inside the Pre-synaptic Terminal Where Calcium Diffusion Triggers Vesicular Release.
Guerrier C, Holcman D
Front Synaptic Neurosci. 2018. 10:23.

Cooperation, cis-interactions, versatility and evolutionary plasticity of multiple cis-acting elements underlie krox20 hindbrain regulation.
Torbey P, Thierion E, Collombet S, de Cian A, Desmarquet‑Trin‑Dinh C, Dura M, Concordet JP, Charnay P, Gilardi‑Hebenstreit P
PLoS Genet. 2018 Aug. 14(8):e1007581.

Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse.
Tubbs A, Sridharan S, van Wietmarschen N, Maman Y, Callen E, Stanlie A, Wu W, Wu X, Day A, Wong N, Yin M, Canela A, Fu H, Redon C, Pruitt SC, Jaszczyszyn Y, Aladjem MI, Aplan PD, Hyrien O, Nussenzweig A
Cell. 2018 Aug 23. 174(5):1127-1142.e19.

Natural Genetic Variation in a Multigenerational Phenotype in C. elegans.
Frézal L, Demoinet E, Braendle C, Miska E, Félix MA
Curr Biol. 2018 Aug 20. 28(16):2588-2596.e8.

Pristionchus nematodes occur frequently in diverse rotting vegetal substrates and are not exclusively necromenic, while Panagrellus redivivoides is found specifically in rotting fruits.
Félix MA, Ailion M, Hsu JC, Richaud A, Wang J
PLoS One. 2018. 13(8):e0200851.

Clade diversification dynamics and the biotic and abiotic controls of speciation and extinction rates.
Aguilée R, Gascuel F, Lambert A, Ferriere R
Nat Commun. 2018 Aug 1. 9(1):3013.

Microbiote et microglie : des interactions prénatales et postnatales distinctes selon l’identité sexuelle.
Thion MS, Garel S
Med Sci (Paris). 2018 Jun-Jul. 34(6-7):527-529.

Single molecule kinetics uncover roles for E. coli RecQ DNA helicase domains and interaction with SSB.
Bagchi D, Manosas M, Zhang W, Manthei KA, Hodeib S, Ducos B, Keck JL, Croquette V
Nucleic Acids Res. 2018 Sep 19. 46(16):8500-8515.

Rapid Voltage Sensing with Single Nanorods via the Quantum Confined Stark Effect.
Bar‑Elli O, Steinitz D, Yang G, Tenne R, Ludwig A, Kuo Y, Triller A, Weiss S, Oron D
ACS Photonics. 2018 Jul 18. 5(7):2860-2867.

Physiological Starvation Promotes Caenorhabditis elegans Vulval Induction.
Grimbert S, Vargas Velazquez AM, Braendle C
G3 (Bethesda). 2018 Aug 30. 8(9):3069-3081.

Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial).
Levy N, Naldi A, Hernandez C, Stoll G, Thieffry D, Zinovyev A, Calzone L, Paulevé L
Front Physiol. 2018. 9:787.

Cyclin G and the Polycomb Repressive complexes PRC1 and PR-DUB cooperate for developmental stability.
Dardalhon‑Cuménal D, Deraze J, Dupont CA, Ribeiro V, Coléno‑Costes A, Pouch J, Le Crom S, Thomassin H, Debat V, Randsholt NB, Peronnet F
PLoS Genet. 2018 Jul. 14(7):e1007498.

Principles of Functional Circuit Connectivity : Insights From Spontaneous Activity in the Zebrafish Optic Tectum.
Marachlian E, Avitan L, Goodhill GJ, Sumbre G
Front Neural Circuits. 2018. 12:46.

The CoLoMoTo Interactive Notebook : Accessible and Reproducible Computational Analyses for Qualitative Biological Networks.
Naldi A, Hernandez C, Levy N, Stoll G, Monteiro PT, Chaouiya C, Helikar T, Zinovyev A, Calzone L, Cohen‑Boulakia S, Thieffry D, Paulevé L
Front Physiol. 2018. 9:680.

Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0.
Naldi A, Hernandez C, Abou‑Jaoudé W, Monteiro PT, Chaouiya C, Thieffry D
Front Physiol. 2018. 9:646.

Low resolution scans can provide a sufficiently accurate, cost- and time-effective alternative to high resolution scans for 3D shape analyses.
Marcy AE, Fruciano C, Phillips MJ, Mardon K, Weisbecker V
PeerJ. 2018. 6:e5032.

The mysterious origins of microglia.
Ginhoux F, Garel S
Nat Neurosci. 2018 Jul. 21(7):897-899.

Gene(s) and individual feeding behavior : Exploring eco-evolutionary dynamics underlying left-right asymmetry in the scale-eating cichlid fish Perissodus microlepis.
Raffini F, Fruciano C, Meyer A
Ecol Evol. 2018 Jun. 8(11):5495-5507.

Exon Junction Complexes can have distinct functional flavours to regulate specific splicing events.
Wang Z, Ballut L, Barbosa I, Le Hir H
Sci Rep. 2018 Jun 22. 8(1):9509.

Ubiquitous abundance distribution of non-dominant plankton across the global ocean.
Ser‑Giacomi E, Zinger L, Malviya S, De Vargas C, Karsenti E, Bowler C, De Monte S
Nat Ecol Evol. 2018 Aug. 2(8):1243-1249.

In need of signalling pathway data.
Pizard A
Eur J Heart Fail. 2018 Aug. 20(8):1202-1204.

Ependymal cilia beating induces an actin network to protect centrioles against shear stress.
Mahuzier A, Shihavuddin A, Fournier C, Lansade P, Faucourt M, Menezes N, Meunier A, Garfa‑Traoré M, Carlier MF, Voituriez R, Genovesio A, Spassky N, Delgehyr N
Nat Commun. 2018 Jun 11. 9(1):2279.

Cancer : From Wild-Type to Mutant Huntingtin.
Thion MS, Humbert S
J Huntingtons Dis. 2018. 7(3):201-208.

Spatiotemporal variation of the association between climate dynamics and HFRS outbreaks in Eastern China during 2005-2016 and its geographic determinants.
He J, Christakos G, Wu J, Cazelles B, Qian Q, Mu D, Wang Y, Yin W, Zhang W
PLoS Negl Trop Dis. 2018 Jun. 12(6):e0006554.

Transcriptional control and exploitation of an immune-responsive family of plant retrotransposons.
Zervudacki J, Yu A, Amesefe D, Wang J, Drouaud J, Navarro L, Deleris A
EMBO J. 2018 Jul 13. 37(14).

The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation.
Arbona JM, Goldar A, Hyrien O, Arneodo A, Audit B
Elife. 2018 Jun 1. 7.

Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion.
Jay P, Whibley A, Frézal L, Rodríguez de Cara MÁ, Nowell RW, Mallet J, Dasmahapatra KK, Joron M
Curr Biol. 2018 Jun 4. 28(11):1839-1845.e3.

Microglia Under the Spotlight : Activity and Complement-Dependent Engulfment of Synapses.
Thion MS, Garel S
Trends Neurosci. 2018 Jun. 41(6):332-334.

Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development.
Lepiniec L, Devic M, Roscoe TJ, Bouyer D, Zhou DX, Boulard C, Baud S, Dubreucq B
Plant Reprod. 2018 Sep. 31(3):291-307.

Dissection of DNA double-strand-break repair using novel single-molecule forceps.
Wang JL, Duboc C, Wu Q, Ochi T, Liang S, Tsutakawa SE, Lees‑Miller SP, Nadal M, Tainer JA, Blundell TL, Strick TR
Nat Struct Mol Biol. 2018 Jun. 25(6):482-487.

Polycomb Repressive Complex 2 attenuates the very high expression of the Arabidopsis gene NRT2.1.
Bellegarde F, Herbert L, Séré D, Caillieux E, Boucherez J, Fizames C, Roudier F, Gojon A, Martin A
Sci Rep. 2018 May 21. 8(1):7905.

Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms.
Kazamia E, Sutak R, Paz‑Yepes J, Dorrell RG, Vieira FRJ, Mach J, Morrissey J, Leon S, Lam F, Pelletier E, Camadro JM, Bowler C, Lesuisse E
Sci Adv. 2018 May. 4(5):eaar4536.

Non-cell Autonomous OTX2 Homeoprotein Regulates Visual Cortex Plasticity Through Gadd45b/g.
Apulei J, Kim N, Testa D, Ribot J, Morizet D, Bernard C, Jourdren L, Blugeon C, Di Nardo AA, Prochiantz A
Cereb Cortex. 2018 May 16.

Transcription-Coupled Repair and Complex Biology.
Portman JR, Strick TR
J Mol Biol. 2018 Oct 26. 430(22):4496-4512.

Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris.
Nomaguchi T, Maeda Y, Yoshino T, Asahi T, Tirichine L, Bowler C, Tanaka T
BMC Genomics. 2018 May 4. 19(1):330.

A cautionary TALE : how plant breeding may have favoured expanded TALE repertoires in Xanthomonas.
Schandry N, Jacobs JM, Szurek B, Perez‑Quintero AL
Mol Plant Pathol. 2018 Jun. 19(6):1297-1301.

RSAT 2018 : regulatory sequence analysis tools 20th anniversary.
Nguyen NTT, Contreras‑Moreira B, Castro‑Mondragon JA, Santana‑Garcia W, Ossio R, Robles‑Espinoza CD, Bahin M, Collombet S, Vincens P, Thieffry D, van Helden J, Medina‑Rivera A, Thomas‑Chollier M
Nucleic Acids Res. 2018 Jul 2. 46(W1):W209-W214.

Quadruplexes in ’Dicty’ : crystal structure of a four-quartet G-quadruplex formed by G-rich motif found in the Dictyostelium discoideum genome.
Guédin A, Lin LY, Armane S, Lacroix L, Mergny JL, Thore S, Yatsunyk LA
Nucleic Acids Res. 2018 Jun 1. 46(10):5297-5307.

Mib1 prevents Notch Cis-inhibition to defer differentiation and preserve neuroepithelial integrity during neural delamination.
Baek C, Freem L, Goïame R, Sang H, Morin X, Tozer S
PLoS Biol. 2018 Apr. 16(4):e2004162.

Evidence for altered dendritic spine compartmentalization in Alzheimer’s disease and functional effects in a mouse model.
Androuin A, Potier B, Nägerl UV, Cattaert D, Danglot L, Thierry M, Youssef I, Triller A, Duyckaerts C, El Hachimi KH, Dutar P, Delatour B, Marty S
Acta Neuropathol. 2018 Jun. 135(6):839-854.

Triheteromeric NMDA receptors : from structure to synaptic physiology.
Stroebel D, Casado M, Paoletti P
Curr Opin Physiol. 2018 Apr. 2:1-12.

Ranked Tree Shapes, Nonrandom Extinctions, and the Loss of Phylogenetic Diversity.
Maliet O, Gascuel F, Lambert A
Syst Biol. 2018 Nov 1. 67(6):1025-1040.

Urbanization prolongs hantavirus epidemics in cities.
Tian H, Hu S, Cazelles B, Chowell G, Gao L, Laine M, Li Y, Yang H, Li Y, Yang Q, Tong X, Huang R, Bjornstad ON, Xiao H, Stenseth NC
Proc Natl Acad Sci U S A. 2018 May 1. 115(18):4707-4712.

Probing Ion Channel Structure and Function Using Light-Sensitive Amino Acids.
Klippenstein V, Mony L, Paoletti P
Trends Biochem Sci. 2018 Jun. 43(6):436-451.

Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends.
Klinger CM, Paoli L, Newby RJ, Wang MY, Carroll HD, Leblond JD, Howe CJ, Dacks JB, Bowler C, Cahoon AB, Dorrell RG, Richardson E
Genome Biol Evol. 2018 Apr 1. 10(4):1019-1038.

Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype.
Boulay AC, Gilbert A, Oliveira Moreira V, Blugeon C, Perrin S, Pouch J, Le Crom S, Ducos B, Cohen‑Salmon M
Brain Sci. 2018 Mar 22. 8(4).

Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms.
Rastogi A, Maheswari U, Dorrell RG, Vieira FRJ, Maumus F, Kustka A, McCarthy J, Allen AE, Kersey P, Bowler C, Tirichine L
Sci Rep. 2018 Mar 19. 8(1):4834.

Asymmetric adhesion of rod-shaped bacteria controls microcolony morphogenesis.
Duvernoy MC, Mora T, Ardré M, Croquette V, Bensimon D, Quilliet C, Ghigo JM, Balland M, Beloin C, Lecuyer S, Desprat N
Nat Commun. 2018 Mar 16. 9(1):1120.

High-throughput fecundity measurements in Drosophila.
Nouhaud P, Mallard F, Poupardin R, Barghi N, Schlötterer C
Sci Rep. 2018 Mar 13. 8(1):4469.

Chemical regulation of body feather microbiota in a wild bird.
Jacob S, Sallé L, Zinger L, Chaine AS, Ducamp C, Boutault L, Russell AF, Heeb P
Mol Ecol. 2018 Apr. 27(7):1727-1738.

Müller glia-derived PRSS56 is required to sustain ocular axial growth and prevent refractive error.
Paylakhi S, Labelle‑Dumais C, Tolman NG, Sellarole MA, Seymens Y, Saunders J, Lakosha H, deVries WN, Orr AC, Topilko P, John SW, Nair KS
PLoS Genet. 2018 Mar. 14(3):e1007244.

A screen for deeply conserved non-coding GWAS SNPs uncovers a MIR-9-2 functional mutation associated to retinal vasculature defects in human.
Madelaine R, Notwell JH, Skariah G, Halluin C, Chen CC, Bejerano G, Mourrain P
Nucleic Acids Res. 2018 Apr 20. 46(7):3517-3531.

Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export.
Leblanc K, Quéguiner B, Diaz F, Cornet V, Michel‑Rodriguez M, Durrieu de Madron X, Bowler C, Malviya S, Thyssen M, Grégori G, Rembauville M, Grosso O, Poulain J, de Vargas C, Pujo‑Pay M, Conan P
Nat Commun. 2018 Mar 5. 9(1):953.

Sequences Flanking the Gephyrin-Binding Site of GlyRβ Tune Receptor Stabilization at Synapses.
Grünewald N, Jan A, Salvatico C, Kress V, Renner M, Triller A, Specht CG, Schwarz G
eNeuro. 2018 Jan-Feb. 5(1).

Optogenetic Tractography for anatomo-functional characterization of cortico-subcortical neural circuits in non-human primates.
Senova S, Poupon C, Dauguet J, Stewart HJ, Dugué GP, Jan C, Hosomi K, Ralph GS, Barnes L, Drouot X, Pouzat C, Mangin JF, Pain F, Doignon I, Aron‑Badin R, Brouillet E, Boyden ES, Mitrophanous KA, Hantraye P, Palfi S
Sci Rep. 2018 Feb 20. 8(1):3362.

Deconvolution of Voltage Sensor Time Series and Electro-diffusion Modeling Reveal the Role of Spine Geometry in Controlling Synaptic Strength.
Cartailler J, Kwon T, Yuste R, Holcman D
Neuron. 2018 Mar 7. 97(5):1126-1136.e10.

Handedness in gestural and manipulative actions in male hunter-gatherer Aka pygmies from Central African Republic.
Robira B, Pouydebat E, San‑Galli A, Meulman EJM, Aubaile F, Breuer T, Masi S
Am J Phys Anthropol. 2018 Jun. 166(2):481-491.

FRET Image Correlation Spectroscopy Reveals RNAPII-Independent P-TEFb Recruitment on Chromatin.
Bidaux G, Le Nézet C, Pisfil MG, Henry M, Furlan A, Bensaude O, Vandenbunder B, Héliot L
Biophys J. 2018 Feb 6. 114(3):522-533.

Differential influences of allometry, phylogeny and environment on the rostral shape diversity of extinct South American notoungulates.
Gomes Rodrigues H, Cornette R, Clavel J, Cassini G, Bhullar BS, Fernández‑Monescillo M, Moreno K, Herrel A, Billet G
R Soc Open Sci. 2018 Jan. 5(1):171816.

Natural Infection of C. elegans by an Oomycete Reveals a New Pathogen-Specific Immune Response.
Osman GA, Fasseas MK, Koneru SL, Essmann CL, Kyrou K, Srinivasan MA, Zhang G, Sarkies P, Félix MA, Barkoulas M
Curr Biol. 2018 Feb 19. 28(4):640-648.e5.

Increased Potency and Selectivity for Group III Metabotropic Glutamate Receptor Agonists Binding at Dual sites.
Selvam C, Lemasson IA, Brabet I, Oueslati N, Karaman B, Cabaye A, Tora AS, Commare B, Courtiol T, Cesarini S, McCort‑Tranchepain I, Rigault D, Mony L, Bessiron T, McLean H, Leroux FR, Colobert F, Daniel H, Goupil‑Lamy A, Bertrand HO, Goudet C, Pin JP, Acher FC
J Med Chem. 2018 Mar 8. 61(5):1969-1989.

Contrasting impacts of competition on ecological and social trait evolution in songbirds.
Drury JP, Tobias JA, Burns KJ, Mason NA, Shultz AJ, Morlon H
PLoS Biol. 2018 Jan. 16(1):e2003563.

HTLV-1 Tax plugs and freezes UPF1 helicase leading to nonsense-mediated mRNA decay inhibition.
Fiorini F, Robin JP, Kanaan J, Borowiak M, Croquette V, Le Hir H, Jalinot P, Mocquet V
Nat Commun. 2018 Jan 30. 9(1):431.

A conserved structural element in the RNA helicase UPF1 regulates its catalytic activity in an isoform-specific manner.
Gowravaram M, Bonneau F, Kanaan J, Maciej VD, Fiorini F, Raj S, Croquette V, Le Hir H, Chakrabarti S
Nucleic Acids Res. 2018 Mar 16. 46(5):2648-2659.

A global ocean atlas of eukaryotic genes.
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc‑Mathieu R, Lima‑Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, Poulain J, Romac S, Richter DJ, Yoshikawa G, Dimier C, Kandels‑Lewis S, Picheral M, Searson S, Jaillon O, Aury JM, Karsenti E, Sullivan MB, Sunagawa S, Bork P, Not F, Hingamp P, Raes J, Guidi L, Ogata H, de Vargas C, Iudicone D, Bowler C, Wincker P
Nat Commun. 2018 Jan 25. 9(1):373.

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels‑Lewis S, Picheral M, Searson S, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P
Nat Commun. 2018 Jan 22. 9(1):310.

The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean.
Vincent FJ, Colin S, Romac S, Scalco E, Bittner L, Garcia Y, Lopes RM, Dolan JR, Zingone A, de Vargas C, Bowler C
ISME J. 2018 Apr. 12(4):1094-1108.

Functional Principles of Posterior Septal Inputs to the Medial Habenula.
Otsu Y, Lecca S, Pietrajtis K, Rousseau CV, Marcaggi P, Dugué GP, Mailhes‑Hamon C, Mameli M, Diana MA
Cell Rep. 2018 Jan 16. 22(3):693-705.

Hexim1, an RNA-controlled protein hub.
Michels AA, Bensaude O
Transcription. 2018. 9(4):262-271.

Control of Protein Activity and Gene Expression by Cyclofen-OH Uncaging.
Zhang W, Hamouri F, Feng Z, Aujard I, Ducos B, Ye S, Weiss S, Volovitch M, Vriz S, Jullien L, Bensimon D
Chembiochem. 2018 Jun 18. 19(12):1232-1238.

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming.
Stadhouders R, Vidal E, Serra F, Di Stefano B, Le Dily F, Quilez J, Gomez A, Collombet S, Berenguer C, Cuartero Y, Hecht J, Filion GJ, Beato M, Marti‑Renom MA, Graf T
Nat Genet. 2018 Feb. 50(2):238-249.

Modelling interaction dynamics between two foliar pathogens in wheat : a multi-scale approach.
Garin G, Pradal C, Fournier C, Claessen D, Houlès V, Robert C
Ann Bot. 2018 Apr 18. 121(5):927-940.

Spatial patterns generated by simultaneous cooperation and exploitation favour the evolution of altruism.
Yamauchi A, van Baalen M, Sabelis MW
J Theor Biol. 2018 Mar 14. 441:58-67.

Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner.
Thion MS, Low D, Silvin A, Chen J, Grisel P, Schulte‑Schrepping J, Blecher R, Ulas T, Squarzoni P, Hoeffel G, Coulpier F, Siopi E, David FS, Scholz C, Shihui F, Lum J, Amoyo AA, Larbi A, Poidinger M, Buttgereit A, Lledo PM, Greter M, Chan JKY, Amit I, Beyer M, Schultze JL, Schlitzer A, Pettersson S, Ginhoux F, Garel S
Cell. 2018 Jan 25. 172(3):500-516.e16.

Detecting Environment-Dependent Diversification From Phylogenies : A Simulation Study and Some Empirical Illustrations.
Lewitus E, Morlon H
Syst Biol. 2018 Jul 1. 67(4):576-593.

Neobodonids are dominant kinetoplastids in the global ocean.
Flegontova O, Flegontov P, Malviya S, Poulain J, de Vargas C, Bowler C, Lukeš J, Horák A
Environ Microbiol. 2018 Feb. 20(2):878-889.

FANCD2 binding identifies conserved fragile sites at large transcribed genes in avian cells.
Pentzold C, Shah SA, Hansen NR, Le Tallec B, Seguin‑Orlando A, Debatisse M, Lisby M, Oestergaard VH
Nucleic Acids Res. 2018 Feb 16. 46(3):1280-1294.

TopA, the Sulfolobus solfataricus topoisomerase III, is a decatenase.
Bizard AH, Yang X, Débat H, Fogg JM, Zechiedrich L, Strick TR, Garnier F, Nadal M
Nucleic Acids Res. 2018 Jan 25. 46(2):861-872.

The Local Coexistence Pattern of Selfing Genotypes in Caenorhabditis elegans Natural Metapopulations.
Richaud A, Zhang G, Lee D, Lee J, Félix MA
Genetics. 2018 Feb. 208(2):807-821.

Greater pollination generalization is not associated with reduced constraints on corolla shape in Antillean plants.
Joly S, Lambert F, Alexandre H, Clavel J, Léveillé‑Bourret É, Clark JL
Evolution. 2018 Feb. 72(2):244-260.

The SlCBL10 Calcineurin B-Like Protein Ensures Plant Growth under Salt Stress by Regulating Na+ and Ca2+ Homeostasis.
Egea I, Pineda B, Ortíz‑Atienza A, Plasencia FA, Drevensek S, García‑Sogo B, Yuste‑Lisbona FJ, Barrero‑Gil J, Atarés A, Flores FB, Barneche F, Angosto T, Capel C, Salinas J, Vriezen W, Esch E, Bowler C, Bolarín MC, Moreno V, Lozano R
Plant Physiol. 2018 Feb. 176(2):1676-1693.

Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements.
Lewis SH, Quarles KA, Yang Y, Tanguy M, Frézal L, Smith SA, Sharma PP, Cordaux R, Gilbert C, Giraud I, Collins DH, Zamore PD, Miska EA, Sarkies P, Jiggins FM
Nat Ecol Evol. 2018 Jan. 2(1):174-181.

Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression.
Berthelot C, Villar D, Horvath JE, Odom DT, Flicek P
Nat Ecol Evol. 2018 Jan. 2(1):152-163.

Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits : how the global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation.
Pirrello J, Deluche C, Frangne N, Gévaudant F, Maza E, Djari A, Bourge M, Renaudin JP, Brown S, Bowler C, Zouine M, Chevalier C, Gonzalez N
Plant J. 2018 Jan. 93(2):387-398.

Krox20 defines a subpopulation of cardiac neural crest cells contributing to arterial valves and bicuspid aortic valve.
Odelin G, Faure E, Coulpier F, Di Bonito M, Bajolle F, Studer M, Avierinos JF, Charnay P, Topilko P, Zaffran S
Development. 2018 Jan 3. 145(1).

ANISEED 2017 : extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.
Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta KR, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, Aicha SB, Fagotto M, Guéroult‑Bellone M, Haeussler M, Jacox E, Lowe EK, Mendez M, Roberge A, Stolfi A, Yokomori R, Brown CT, Cambillau C, Christiaen L, Delsuc F, Douzery E, Dumollard R, Kusakabe T, Nakai K, Nishida H, Satou Y, Swalla B, Veeman M, Volff JN, Lemaire P
Nucleic Acids Res. 2018 Jan 4. 46(D1):D718-D725.

The "sacral parasympathetic" : ontogeny and anatomy of a myth.
Espinosa‑Medina I, Saha O, Boismoreau F, Brunet JF
Clin Auton Res. 2018 Feb. 28(1):13-21.

Compound Functional Prediction Using Multiple Unrelated Morphological Profiling Assays.
Rose F, Basu S, Rexhepaj E, Chauchereau A, Del Nery E, Genovesio A
SLAS Technol. 2018 Jun. 23(3):243-251.

Genomicus 2018 : karyotype evolutionary trees and on-the-fly synteny computing.
Nguyen NTT, Vincens P, Roest Crollius H, Louis A
Nucleic Acids Res. 2018 Jan 4. 46(D1):D816-D822.

Cell Type-Specific Profiling of Chromatin Modifications and Associated Proteins.
Morao AK, Caillieux E, Colot V, Roudier F
Methods Mol Biol. 2018. 1675:111-130.

Profiling Developmentally and Environmentally Controlled Chromatin Reprogramming.
Bourbousse C, Benhamed M, Barneche F
Methods Mol Biol. 2018. 1675:3-30.

An Assessment of Phylogenetic Tools for Analyzing the Interplay Between Interspecific Interactions and Phenotypic Evolution.
Drury JP, Grether GF, Garland T Jr, Morlon H
Syst Biol. 2018 May 1. 67(3):413-427.

Laser microdissection : A powerful tool for genomics at cell level.
Bevilacqua C, Ducos B
Mol Aspects Med. 2018 Feb. 59:5-27.

Tangential migration of corridor guidepost neurons contributes to anxiety circuits.
Tinterri A, Deck M, Keita M, Mailhes C, Rubin AN, Kessaris N, Lokmane L, Bielle F, Garel S
J Comp Neurol. 2018 Feb 15. 526(3):397-411.

Nerves, H2O2 and Shh : Three players in the game of regeneration.
Meda F, Rampon C, Dupont E, Gauron C, Mourton A, Queguiner I, Thauvin M, Volovitch M, Joliot A, Vriz S
Semin Cell Dev Biol. 2018 Aug. 80:65-73.

Neurons derived from patients with bipolar disorder divide into intrinsically different sub-populations of neurons, predicting the patients’ responsiveness to lithium.
Stern S, Santos R, Marchetto MC, Mendes APD, Rouleau GA, Biesmans S, Wang QW, Yao J, Charnay P, Bang AG, Alda M, Gage FH
Mol Psychiatry. 2018 Jun. 23(6):1453-1465.