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Workshop : Anniversary RSAT/GINsim

Wed 16th and Thursday 17th May, 2018 at Ecole Normale Supérieure Paris

RSAT and GINsim are reaching their 20th and 15th anniversary, respectively.
To celebrate these two achievements, we are organising

  • a one-day workshop,
  • followed by two half-day practical tutorials of the tools.

Invited speakers Wed 16th May :

  • Samuel Collombet (Institut Curie, Paris)
  • Claudine Chaouiya (IGC, Lisbon, Portugal)
  • Bruno Contreiras Moreira (Estación Experimental de Aula Dei-CSIC, Zaragoza, Spain)
  • Carl Herrmann (Universität Heidelberg, DKFZ, Heidelberg, Germany)
  • Anthony Mathelier (NCMM, Oslo Norway)
  • Pedro Monteiro (INESC-ID / IST - Universidade de Lisboa, Portugal)
  • Elisabeth Remy (Institut de Mathématiques de Marseille)
  • Hugues Roest Crollius (IBENS, Paris)
  • Jacques van Helden (TAGC Marseille)

Practical sessions Thursday 17th May (limited to 20 participants) :

RSAT training session (morning)
Alejandra Medina-Rivera
Morgane Thomas-Chollier
Jacques van Helden

GinSim training session (afternoon)
Aurélien Naldi
Denis Thieffry

Registration is free but compulsory.


09:00-09:15 : Welcome and opening

Session 1 : Regulatory Genomics
09:15-09:45 : Jacques van Helden : The white rabbit and the molecular clock
09:45-10h15 : Anthony Mathelier : From ChIP-seq raw data to the prediction of direct TF-DNA interactions
10:15-10h45 : Carl Herrmann : Dimensional reduction and omics data integration

10:45-11h15 : Coffee break

11:15-11:45 : Hugues Roest-Crollius : From whole genomes to single base analyses of regulatory DNA in vertebrates
11:45-12:15 : Bruno Contreiras : Discovering gene regulation in plants with RSAT & footprintDB

Session 2 : Logical Modelling
14:00-14:30 : Claudine Chaouiya : Assessing attractor reachability in asynchronous logical models
14:30-15:00 : Pedro Monteiro : From cellular to multi-cellular logical models with EpiLog
15:00-15:30 : Elisabeth Remy : Discovery and analysis of functional motifs : from theory to GINsim, back and forth

15:30-16:00 : Coffee break

Session 3 : Integrated regulatory genomics
16:00-16:30 : Samuel Collombet : Logical modelling of immune cells specification and reprogramming
16:30-17:30 : General Discussion / Round table

17:30-18h:30 : Festive discussion with drinks

Past events organised by our team

2018 : Franco-Singaporean workshop on RNA Biology applied to Leukemia research
2017 : Workshop : Computational approaches for the study of blood cell specification