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Workshop : Anniversary RSAT/GINsim

Wed 16th and Thursday 17th May, 2018 at Ecole Normale Supérieure Paris

RSAT and GINsim are reaching their 20th and 15th anniversary, respectively.
To celebrate these two achievements, we are organising

  • a one-day workshop (Wed 16th),
  • followed by two half-day practical tutorials of the tools (Thursday 17th May)

List of registered participants

Registration is free but compulsory.


09:00-09:15 : Welcome and opening
Chair : Alejandra Medina Rivera
Session 1 : Regulatory Genomics
09:15-09:45 : Jacques van Helden (TAGC Marseille) : The white rabbit and the molecular clock
09:45-10h15 : Anthony Mathelier (NCMM, Oslo Norway) : From ChIP-seq raw data to the prediction of direct TF-DNA interactions
10:15-10h45 : Carl Herrmann (Universität Heidelberg, DKFZ, Heidelberg, Germany) : Dimensional reduction and omics data integration

10:45-11h15 : Coffee break

11:15-11:45 : Hugues Roest-Crollius (IBENS, Paris) : From whole genomes to single base analyses of regulatory DNA in vertebrates
11:45-12:15 : Bruno Contreiras Moreira & Francesc Montardit (Estación Experimental de Aula Dei-CSIC, Zaragoza, Spain) : Discovering gene regulation in plants with RSAT & footprintDB

Session 2 : Logical Modelling
Chair : Denis Thieffry
14:00-14:30 : Claudine Chaouiya (IGC, Lisbon, Portugal) : Assessing attractor reachability in asynchronous logical models
14:30-15:00 : Pedro Monteiro (INESC-ID / IST - Universidade de Lisboa, Portugal) : From cellular to multi-cellular logical models with EpiLog
15:00-15:30 : Elisabeth Remy (Institut de Mathématiques de Marseille) : Discovery and analysis of functional motifs : from theory to GINsim, back and forth

15:30-16:00 : Coffee break

Session 3 : Integrated regulatory genomics
Chair : Morgane Thomas-Chollier
16:00-16:30 : Samuel Collombet (Institut Curie, Paris) : Logical modelling of immune cells specification and reprogramming
16:30-17:30 : General Discussion / Round table

17:30-18h:30 : Festive discussion with drinks

Practical sessions Thursday 17th May (limited to 20 participants) :

RSAT training session (morning)
Alejandra Medina-Rivera
Morgane Thomas-Chollier
Jacques van Helden
Bruno Contreiras Moreira

GINSim training session (afternoon)
Denis Thieffry
Aurélien Naldi
Céline Hernandez

Past events organised by our team

2018 : Franco-Singaporean workshop on RNA Biology applied to Leukemia research
2017 : Workshop : Computational approaches for the study of blood cell specification